Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0212 ATGCTAGGTTGCTCAAGCTTCGGCGATCGTAAGGGAGTTAGAATTGCCGTCGTAGGCGATGGTGGCACCGGAAAATCCTCACTCATCGCCGCCATGGCTTCCGAGTCTTTTCCCGATTCCGTTCCGCCCGTTCTTCCACCCACTCGTTTGCCTCATAATTTGTACCCTGATTCTGTTCCTCTTACCCTCATTGACACACCTTCCAGTTTGGAAAAACAAGGCACACGCAATGAAGAATTGAAGATAGCTGATGCAGTGGTTGTAACATATGCTTGTGATGAACCCTTCACCTTTGATCGTTTGGGTACTTACTGGCTCATTGAACTGCAGAGATTGGAGGTGAAGGCACCTGTGGTTGTGGTTGGTTGCAAGATGGATTTGCGCGACGAGAACCAGGTAGTGAGCTTAGAAAGTCTCACATCATACCTCATGCAACAGTTCACGGAAATTGTCACCTGCGTTGAATGCTCTGCAGCAACACTATATCAGGTCCCTGAAGTTTTTTATTTTGCCCAAAAGGCAGTACTGCATCCAGTCGGTCCATTGTTTGATTATGAAAGACATACTTTTACAGATCGATGTCTAAGGGCATTAAGAAGAATATTTGTTCTTTGCGATCATGATATGGATGGTGCCCTCAACGATGAAGAACTAAATGAATTTCAGGTTAAATGCTTCAATGAAGGATTGCAACCAACTGAAGTAGCTAAAGTCAAAACACTTGTAGATCAGAATGTACCAGAAGGAATCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTATGTGCATAATATATTTCTAAAGAAAGGTCGTACAGAGACATTCTGGGCTGTTCTGAGAAAGTTTGGATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCTGTTCCATCTAAGCAGGCTTCTGATCAGAGTGTGGAGCTTACAAGTGAAGCTGTTGAGTTTCTGAATGGTATCTTTCGATTGTTAGACACAGACAAAGATCGATCCCTACGACCAGCTGAAGTTGATAGGCTATTTAATACTGCTCCAGAAAGTCCATGGAATGATGCTCCGTATAAGGATGCAGCTGAGAAAACTGACATGGGTTACATACCTCTGAACGGATTTCTGTCTCAGTGGGCCCTTATGACATTACTTGATCCGCCACATAGCTTGGCTAATTTGGTTTACATTGGATATAGTGGTAATCCTGCTTCAGCACTCCGTGTTACTCAAAAAAGATCAGTAGATCGCAAGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGGTCTAAAAATGCTGGGAAATCTGCTTTGCTGCATTCGTTATTGGGAAGGCCCTTCTCAAGTAATTATACTCCTACAAAAGTTGAGCAGTATGCAGCAAATGTCATTGAACTAATAGGGGGATCTAAGAAGACTCTCATATTGCGGGAGATACCAGAGGACGGAGTATTGAAATTATTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGTTTTTGTATATGACAGCTCAGATGAATATTCATGGAAGAAGTCCAGAGATTTACTTGAGAAGGTTGTTAGACAAGGAGAACTAACTGGTTACAGAGTTCCTTGCCTCCTCATTGCTGCTAAAGATGATTTAAATCCATACCCCAGGGCAGTAATAGATTCAGTTAAGGTTACTCAGGAATTGGGAATCGAGGCACCTATTCACGTAAGTATGAAATCAGGTGATTCAAGTAATGTATATAATAAGATTGTCAATGCCGCGGAACACCCTCATTTGAGCATTCCTGAAACTGAGATTGCAAAGAAAAGAAAGCAAAACCAACAGCTTCTCCACCACTCTTTTATTTTTGCCTTAGTTGGAGCTATTGTAACAGTTGTTGGTTTGAAAGTTTCTCGTGCACGGTCAGTGAAGAAAAACTTTTCTGCTTAG 1932 0.4167 MLGCSSFGDRKGVRIAVVGDGGTGKSSLIAAMASESFPDSVPPVLPPTRLPHNLYPDSVPLTLIDTPSSLEKQGTRNEELKIADAVVVTYACDEPFTFDRLGTYWLIELQRLEVKAPVVVVGCKMDLRDENQVVSLESLTSYLMQQFTEIVTCVECSAATLYQVPEVFYFAQKAVLHPVGPLFDYERHTFTDRCLRALRRIFVLCDHDMDGALNDEELNEFQVKCFNEGLQPTEVAKVKTLVDQNVPEGINSLGLTFPGFIYVHNIFLKKGRTETFWAVLRKFGYDNDLKLRDDFLPVPSKQASDQSVELTSEAVEFLNGIFRLLDTDKDRSLRPAEVDRLFNTAPESPWNDAPYKDAAEKTDMGYIPLNGFLSQWALMTLLDPPHSLANLVYIGYSGNPASALRVTQKRSVDRKKQKTERNVFQCYVFGSKNAGKSALLHSLLGRPFSSNYTPTKVEQYAANVIELIGGSKKTLILREIPEDGVLKLLSNQDCLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRQGELTGYRVPCLLIAAKDDLNPYPRAVIDSVKVTQELGIEAPIHVSMKSGDSSNVYNKIVNAAEHPHLSIPETEIAKKRKQNQQLLHHSFIFALVGAIVTVVGLKVSRARSVKKNFSA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0212 643 Pfam EF hand associated 230 313 IPR013567 -
Lal12g0212 643 CDD Miro2 420 599 - -
Lal12g0212 643 Gene3D - 291 481 - -
Lal12g0212 643 Gene3D - 489 588 IPR027417 -
Lal12g0212 643 SMART ras_sub_4 10 178 - -
Lal12g0212 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Lal12g0212 643 Gene3D - 9 180 IPR027417 -
Lal12g0212 643 SUPERFAMILY EF-hand 180 377 IPR011992 -
Lal12g0212 643 SMART rab_sub_5 13 178 - -
Lal12g0212 643 PANTHER RHO FAMILY GTPASE 1 494 IPR003578 GO:0005525|GO:0007264
Lal12g0212 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Lal12g0212 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Lal12g0212 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Lal12g0212 643 PANTHER MITOCHONDRIAL RHO GTPASE 1 494 - -
Lal12g0212 643 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Lal12g0212 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Lal12g0212 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Lal12g0212 643 Pfam EF hand associated 350 418 IPR013566 -
Lal12g0212 643 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Lal12g0212 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 210 IPR027417 -
Lal12g0212 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Lal12g0212 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Lal12g0212 643 Gene3D - 185 289 - -
Lal12g0212 643 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lal12g0212 643 Pfam Ras family 428 550 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0212 Lal-Chr12 1528335 1534531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0212 3 640 EF-hand Containing Proteins AT3G63150 59.091 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0212 K07870 - gmx:100806983 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1931 1 21465817 21471130 Lal12g0212 12 1528335 1534531 PCT
Lal12g0212 12 1528335 1534531 Lal1g1931 1 21465817 21471130 PCT