Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1839 ATGCCTCGCTACGAAGATAGATATGATAATACTCGCCTCTATGTTGGTCGCTTGAACTCAAGGACACGATCCCGCGATCTCGAGCGGGTCTTCAACAGATATGGAAGAGTTCGCAATGTGGATATGAAGCATGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCTGATGATGCAAGATATCACTTGGATGGTCGTGATGTTGATGGAAGTCGTCTTATTGTTGAGTTTGCAAAAGGGGTTCCTCGTGGTTCCCAGGCTCCTCGTGGTTCCCGGGAATATTTGGGCCGAGGTCCTGCTCCTGGATCTGGGCGCTGCTTTAACTGTGGCCTTGATGGCCACTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCACATAGAAAAGAACTGCAAGAATAGTCCCAAAAAGTTGAGACGTGAAAGAAGTTATTCACGCTCACCAGTCAGGGGACGTTCTCCTCGTCGTGGCAGAAGCAGGGAGCGAAGCTACAGCCGAGACCGCAGCTACAGCCGATCAAGATCCCCTGTCCGATCCCCTGTCCGTGAACGAAGTCCTGTTCGTAAAGATAGATCAGAGAGTCCTCGCTACAGAAGCCCTGACCCCAAAAGTAGTCCTCTACCTGCAAGGAAGCATAGTCCATCACCTGGCCGAGGTAGCCCACAGAAGAGTGGTGACATTTCTCCTGGTAATGATAGGTTGGCCATACAGCAAGATGGGTCTGACTACAGTGATGGTCCGAGAGAGAAGAGCGGAAGCCCTGCTAGCCCTGTAAGGGACCGTGAGGATGATAGTCCTAGAGCTAATGGTGCTAGCCGTAGCCCTAGCCGCAGTCCCAGGGATGACAGGAGCCCCATTGACAATGACGATGACAACCACCGCGGTTCCCCTAGAGGCAGTGAGTCACCTTAA 945 0.5206 MPRYEDRYDNTRLYVGRLNSRTRSRDLERVFNRYGRVRNVDMKHDFAFVEFSDPRDADDARYHLDGRDVDGSRLIVEFAKGVPRGSQAPRGSREYLGRGPAPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLRRERSYSRSPVRGRSPRRGRSRERSYSRDRSYSRSRSPVRSPVRERSPVRKDRSESPRYRSPDPKSSPLPARKHSPSPGRGSPQKSGDISPGNDRLAIQQDGSDYSDGPREKSGSPASPVRDREDDSPRANGASRSPSRSPRDDRSPIDNDDDNHRGSPRGSESP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1839 314 MobiDBLite consensus disorder prediction 287 314 - -
Lal1g1839 314 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 294 - -
Lal1g1839 314 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 7 294 - -
Lal1g1839 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Lal1g1839 314 Pfam Zinc knuckle 127 144 IPR001878 GO:0003676|GO:0008270
Lal1g1839 314 Pfam Zinc knuckle 106 121 IPR001878 GO:0003676|GO:0008270
Lal1g1839 314 ProSiteProfiles Zinc finger CCHC-type profile. 106 121 IPR001878 GO:0003676|GO:0008270
Lal1g1839 314 MobiDBLite consensus disorder prediction 140 159 - -
Lal1g1839 314 MobiDBLite consensus disorder prediction 140 314 - -
Lal1g1839 314 SUPERFAMILY Retrovirus zinc finger-like domains 98 145 IPR036875 GO:0003676|GO:0008270
Lal1g1839 314 SUPERFAMILY RNA-binding domain, RBD 8 106 IPR035979 GO:0003676
Lal1g1839 314 Gene3D - 97 124 - -
Lal1g1839 314 Gene3D - 125 157 - -
Lal1g1839 314 MobiDBLite consensus disorder prediction 169 209 - -
Lal1g1839 314 Gene3D - 3 92 IPR012677 -
Lal1g1839 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Lal1g1839 314 SMART rrm1_1 12 77 IPR000504 GO:0003723
Lal1g1839 314 ProSiteProfiles Zinc finger CCHC-type profile. 128 144 IPR001878 GO:0003676|GO:0008270
Lal1g1839 314 MobiDBLite consensus disorder prediction 265 279 - -
Lal1g1839 314 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Lal1g1839 314 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1839 Lal-Chr1 20666536 20669738 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1839 K12896 - gmx:100813237 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1839 1 20666536 20669738 Lal1g1839 1 20666536 20669738 ECH
Lal11g1132 11 15065979 15068595 Lal1g1839 1 20666536 20669738 LSH