Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1132 ATGCCCCGCTATGAAGATAGGTATGGTAATACTCGCCTTTATGTGGGTCGCTTGTCCTCGAGGACACGCTCTCGCGATCTTGAGAGAGTTTTCAACAGATATGGAAGGTTTCTGGGGTTATTTCCTAAACCTGGAGGTCTGTGGTGGGAGGGTGGCCTTGGTGGAATAAATTCCTGCCAAGTGTTGACTTTGGCGATTCTTTCTGTAATGTTATTGCATGTTTTTATGGAAATGGCAACAAATCACAAACTGGAGTTAAGTAATGATGGCCTTACTGTTTCTGGAAAACATTTCCGCAGCGTTCGATATGTGGATATGAAGAATGATTTTGCCTTTGTTGAATTTAGCGATCACCGAGATGCTGATGAGGCAAGATATCAGTTGGATGGTCGTGATGTTGATGGAAGTCGTCTTATTGTAGAATTTGCGAAAGGGGTTCCTCGAGGTTCCCAGGTTCCTCAGGGTTCCCGGGAATATTTAGGTCGGGGTCCTGCTCCTGGATCTGGCCGCTGCTTTAACTGTGGCCTTGATGGCCACTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAAAGAGGCCATATCGAAAAGAACTGCAAAAATAGTCCCAAAAAGTTGAGACGTGAAAGGAGTTATTCACGCTCACCCGTCAGGTCACGTTCTCCTCGTCGTGGTAGAAGCCGGGATCGAAGTTACAGTCGAGACCGCAGCTACAGCCGATCAAGATCCCCTGTCCGTGAACGAAGCCCGGTTCATAAGGATAGATCAGAGAGTCCTCGCTACAGAAGACATGAACCCAAGAGTAGTCCTCTGCCCTCCAAGGCAAGGAAGCATAGTCCATCACCTGACCAAGGCAGCCCACAGAAGAGTGGTGACACTTCTCCTGATAATGATAGGCTGGCCAGACGGCAAGATGGGTCTGACTACAGCAATGGTCCTAGAGAGAAGAGTAGAAGCCCTGCTAGCCCTGCAAGGGCCCACAAAAATGATAGCCGGAGCCCCAGGGATGATGACCAGAGCCCCAGGGATGACGACCGGGACCGGAGCCCCAGGGGTGACGACCGGAGCCACAGCCCCAGGGACGATGACCATAGCCTCAGCCCAAGGGATGATGACCGTAGCCCATGA 1149 0.5109 MPRYEDRYGNTRLYVGRLSSRTRSRDLERVFNRYGRFLGLFPKPGGLWWEGGLGGINSCQVLTLAILSVMLLHVFMEMATNHKLELSNDGLTVSGKHFRSVRYVDMKNDFAFVEFSDHRDADEARYQLDGRDVDGSRLIVEFAKGVPRGSQVPQGSREYLGRGPAPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLRRERSYSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPVRERSPVHKDRSESPRYRRHEPKSSPLPSKARKHSPSPDQGSPQKSGDTSPDNDRLARRQDGSDYSNGPREKSRSPASPARAHKNDSRSPRDDDQSPRDDDRDRSPRGDDRSHSPRDDDHSLSPRDDDRSP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1132 382 MobiDBLite consensus disorder prediction 204 382 - -
Lal11g1132 382 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z32 6 331 - -
Lal11g1132 382 SMART c2hcfinal6 170 186 IPR001878 GO:0003676|GO:0008270
Lal11g1132 382 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Lal11g1132 382 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 331 - -
Lal11g1132 382 ProSiteProfiles Zinc finger CCHC-type profile. 192 208 IPR001878 GO:0003676|GO:0008270
Lal11g1132 382 SUPERFAMILY Retrovirus zinc finger-like domains 162 209 IPR036875 GO:0003676|GO:0008270
Lal11g1132 382 Gene3D - 150 190 - -
Lal11g1132 382 Gene3D - 3 149 IPR012677 -
Lal11g1132 382 MobiDBLite consensus disorder prediction 204 223 - -
Lal11g1132 382 SUPERFAMILY RNA-binding domain, RBD 98 170 IPR035979 GO:0003676
Lal11g1132 382 SMART rrm1_1 12 141 IPR000504 GO:0003723
Lal11g1132 382 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Lal11g1132 382 Pfam Zinc knuckle 170 185 IPR001878 GO:0003676|GO:0008270
Lal11g1132 382 Pfam Zinc knuckle 191 208 IPR001878 GO:0003676|GO:0008270
Lal11g1132 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 145 IPR000504 GO:0003723
Lal11g1132 382 Gene3D - 191 233 - -
Lal11g1132 382 MobiDBLite consensus disorder prediction 302 319 - -
Lal11g1132 382 MobiDBLite consensus disorder prediction 286 301 - -
Lal11g1132 382 MobiDBLite consensus disorder prediction 327 382 - -
Lal11g1132 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 138 IPR000504 GO:0003723
Lal11g1132 382 MobiDBLite consensus disorder prediction 233 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1132 Lal-Chr11 15065979 15068595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1132 K12896 - gmx:100813237 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1132 11 15065979 15068595 Lal1g1839 1 20666536 20669738 LSH