Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1801 ATGCCAGAGATGGATAATACATTCCTCTTCACCTCAGAATCTGTGAATGAAGGGCACCCAGACAAGCTTTGTGACCAAGTTTCTGATGCAATCCTTGATGCATGCTTGGAGCAAGACCCAGAAAGCAAGGTTGCTTGTGAGACATGTACTAAAACTAACATGGTTATGGTCTTTGGTGAGATCACAACCAAGGCTAAGGTAAACTATGAGAAAATTGTTAGAGACACTTGTAGGGGCATTGGATTTGTGTCTGCTGATGTTGGTCTTGATGCTGATAAGTGCAATGTTCTTGTCAACATTGAGCAACAAAGTCCTGATATAGCCCAAGGAGTTCATGGTCACATGACCAAAGCACCTGAAGAGATTGGTGCTGGTGATCAAGGCCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTTATGCCACTCACTCATGTGCTTGCTACTAAACTCGGTGCCAAGCTCACCGAAGTTAGGAAGAACAAAACATGCCCATGGCTAAGGCCTGATGGTAAAACCCAAGTCACTGTTGAGTACAGGAATGACAATGGGGCAATGGTCCCTCTTAGGGTGCACACAGTCCTTATCTCAACTCAACATGATGAAACTGTCACAAATGAACAAATTGCTGCAGACTTAAAAGAGCATGTTATAAAGCCTGTGATTCCAGCTCAATACCTTGATGACAAGACCATATTCCATCTTAATCCTTCGGGTCGATTCGTGATTGGAGGACCTCATGGAGATGCTGGACTAACTGGCAGGAAGATCATTATCGACACGTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCTGGCAAGGATCCTACCAAGGTGGATAGGAGTGGTGCATACATTGTTAGACAGGCTGCAAAGAGTATCGTAGCTTCGGGGCTTGCTCGACGTTGTATTGTGCAGGTTTCCTATGCAATTGGAGTCCCAGAGCCATTGTCTGTGTTTGTAGACACATACAAAACAGGAAAGATTCCGGACAAAGATATCTTGGATTTGATTAAGGAGAACTTTGATTTCAGGCCAGGAATGATGGCTATCCATCTTGACCTTACCAGAGGAGGCAATTTCAGGTACCAAAAGACTGCTGCTTATGGACATTTTGGACGTGATGATCCCGATTTTACTTGGGAGACAATAAAGGTACTAAAGCCAAAGGCTTAA 1185 0.4473 MPEMDNTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHMTKAPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNDNGAMVPLRVHTVLISTQHDETVTNEQIAADLKEHVIKPVIPAQYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMMAIHLDLTRGGNFRYQKTAAYGHFGRDDPDFTWETIKVLKPKA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1801 394 SUPERFAMILY S-adenosylmethionine synthetase 7 113 IPR022636 GO:0004478|GO:0006556
Lal1g1801 394 Pfam S-adenosylmethionine synthetase, N-terminal domain 8 105 IPR022628 GO:0004478|GO:0006556
Lal1g1801 394 SUPERFAMILY S-adenosylmethionine synthetase 244 390 IPR022636 GO:0004478|GO:0006556
Lal1g1801 394 PIRSF MAT 2 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lal1g1801 394 Gene3D - 121 385 - -
Lal1g1801 394 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 6 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lal1g1801 394 Gene3D - 8 246 - -
Lal1g1801 394 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 2 6 394 - -
Lal1g1801 394 ProSitePatterns S-adenosylmethionine synthase signature 1. 123 133 IPR022631 GO:0004478|GO:0006556
Lal1g1801 394 ProSitePatterns S-adenosylmethionine synthase signature 2. 270 278 IPR022631 GO:0004478|GO:0006556
Lal1g1801 394 TIGRFAM metK: methionine adenosyltransferase 9 391 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lal1g1801 394 CDD S-AdoMet_synt 9 385 - -
Lal1g1801 394 Hamap S-adenosylmethionine synthase [metK]. 6 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lal1g1801 394 Pfam S-adenosylmethionine synthetase, central domain 121 242 IPR022629 GO:0004478|GO:0006556
Lal1g1801 394 Gene3D - 15 283 - -
Lal1g1801 394 Pfam S-adenosylmethionine synthetase, C-terminal domain 244 385 IPR022630 GO:0004478|GO:0006556
Lal1g1801 394 SUPERFAMILY S-adenosylmethionine synthetase 120 243 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1801 Lal-Chr1 20354453 20355637 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1801 K00789 - csv:101222328 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1801 1 20354453 20355637 Lal1g1801 1 20354453 20355637 ECH
Lal11g1170 11 15432030 15435986 Lal1g1801 1 20354453 20355637 LSH