Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1796 ATGAATTCATACTCATCAGTTCATAGCAGTGGCTATGATCTCTCTTTTAAGATCTTGTTGATTGGTGATTCTGGTGTTGGAAAAAGTAGCATACTTGTCAGCTTCATTTCCAACCCTGTTGAAGATCTTACACCTACCATTGGAGTTGATTTTAAGATCAAAACATTCGCTGTAGGCGGGAAGAGATTAAAACTAACAATATGGGACACCGCTGGGCAAGAAAGGTTCAGGACTCTAACAAGTTCTTACTATAGAGGAGCACAAGGAATCATTCTAGTTTATGATGTCACAAGGAGAGATACATTTACAAACTTGTCAGAAGTGTGGTCTAAAGAATTGGAACTCAACTCAACTAATCAAGATTGTGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGTTTAGCTCTTGCCAAAGAATTGGGGTGCTTGCTTTTTGAATGTAGTGCTAAAACTAGAGAAAATGTGGAGAGTTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCTAGTCTTTTGGAAGAAGGATCAATAGCAGCAGTTAAAAGAAATGTTTTAAAGCAGAAACAGGAACCTCAAGTATCCCAAAATGGTGGTTGTTGCTCTTAA 642 0.3847 MNSYSSVHSSGYDLSFKILLIGDSGVGKSSILVSFISNPVEDLTPTIGVDFKIKTFAVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSEVWSKELELNSTNQDCVKMLVGNKVDRDSERAVSREEGLALAKELGCLLFECSAKTRENVESCFEELALKIMEAPSLLEEGSIAAVKRNVLKQKQEPQVSQNGGCCS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1796 213 PANTHER SMALL MONOMERIC GTPASE-RELATED 6 213 - -
Lal1g1796 213 ProSiteProfiles small GTPase Ras family profile. 10 213 IPR001806 GO:0003924|GO:0005525
Lal1g1796 213 SMART ran_sub_2 21 212 - -
Lal1g1796 213 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
Lal1g1796 213 CDD Rab18 16 177 - -
Lal1g1796 213 TIGRFAM small_GTP: small GTP-binding protein domain 16 172 IPR005225 GO:0005525
Lal1g1796 213 ProSiteProfiles small GTPase Rab1 family profile. 11 213 - -
Lal1g1796 213 Gene3D - 9 212 IPR027417 -
Lal1g1796 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 207 IPR027417 -
Lal1g1796 213 SMART arf_sub_2 1 181 - -
Lal1g1796 213 SMART rho_sub_3 18 181 IPR001806 GO:0003924|GO:0005525
Lal1g1796 213 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Lal1g1796 213 PRINTS Transforming protein P21 ras signature 16 37 - -
Lal1g1796 213 PRINTS Transforming protein P21 ras signature 38 54 - -
Lal1g1796 213 PRINTS Transforming protein P21 ras signature 56 78 - -
Lal1g1796 213 PRINTS Transforming protein P21 ras signature 120 133 - -
Lal1g1796 213 PRINTS Transforming protein P21 ras signature 155 177 - -
Lal1g1796 213 SMART ras_sub_4 13 180 - -
Lal1g1796 213 SMART rab_sub_5 16 180 - -
Lal1g1796 213 ProSiteProfiles small GTPase Arf family profile. 9 178 - -
Lal1g1796 213 PANTHER DRAB5-RELATED 6 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1796 Lal-Chr1 20291369 20295082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1796 6 180 EF-hand Containing Proteins AT5G27540 28.652 7.37e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1796 K07910 - gmx:100799887 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1796 1 20291369 20295082 Lal1g1796 1 20291369 20295082 ECH
Lal11g1179 11 15543980 15552665 Lal1g1796 1 20291369 20295082 LSH