Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1179 ATGAGTTCATCCTCAGGTCAAAGTAGTGGCTATGATCTTTCTTTTAAGATCTTGTTGATTGGTGATTCTAGTGTTGGAAAAAGTAGCTTACTTGTAACCTTCATTTCCAACCCTGTTGAAGATCTTGCACCTACCATTGGTGTTGATTTTAAGATCAAAACATTCACAGTAGGTGGGAAGAGATTAAAACTAACAATCTGGGACACTGCTGGGCAGGAAAGATTTAGGACTTTAACAAGTTCTTACTATAGAGGAGCACAAGGAATCATTCTTGTTTACGACGTCACAAGGAGAGAAACCTTTACAAACTTATCAGAAGTTTGGTCTAAAGAATTGGGACTCTATTCAACTAATCAAGCTTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAAAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGTTTAGCTCTTGCTAAAGAGTTGGGGTGTTTGCTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGCGGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCTAGTCTTTTGGAAGAAGGATCAACAGCAGCAGTTAAAAGGAATGTTTTAAAGCAGAAACAGGAACCTCATTCATCCCGAAATGGTGGTTGTTGCTCTTAA 639 0.3897 MSSSSGQSSGYDLSFKILLIGDSSVGKSSLLVTFISNPVEDLAPTIGVDFKIKTFTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELGLYSTNQACVKMLVGNKVDKDSERAVSREEGLALAKELGCLLFECSAKTRENVERCFEELALKIMEAPSLLEEGSTAAVKRNVLKQKQEPHSSRNGGCCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1179 212 SMART arf_sub_2 5 180 - -
Lal11g1179 212 Gene3D - 8 211 IPR027417 -
Lal11g1179 212 ProSiteProfiles small GTPase Ras family profile. 6 212 IPR001806 GO:0003924|GO:0005525
Lal11g1179 212 CDD Rab18 15 176 - -
Lal11g1179 212 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Lal11g1179 212 PRINTS Transforming protein P21 ras signature 15 36 - -
Lal11g1179 212 PRINTS Transforming protein P21 ras signature 37 53 - -
Lal11g1179 212 PRINTS Transforming protein P21 ras signature 55 77 - -
Lal11g1179 212 PRINTS Transforming protein P21 ras signature 119 132 - -
Lal11g1179 212 PRINTS Transforming protein P21 ras signature 154 176 - -
Lal11g1179 212 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Lal11g1179 212 SMART ras_sub_4 12 179 - -
Lal11g1179 212 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Lal11g1179 212 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 212 - -
Lal11g1179 212 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Lal11g1179 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 200 IPR027417 -
Lal11g1179 212 SMART rab_sub_5 15 179 - -
Lal11g1179 212 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Lal11g1179 212 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
Lal11g1179 212 SMART ran_sub_2 20 211 - -
Lal11g1179 212 PANTHER DRAB5-RELATED 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1179 Lal-Chr11 15543980 15552665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1179 9 179 EF-hand Containing Proteins AT5G27540 28.736 1.05e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1179 K07910 - gmx:100799887 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1179 11 15543980 15552665 Lal11g1179 11 15543980 15552665 ECH
Lal11g1179 11 15543980 15552665 Lal1g1796 1 20291369 20295082 LSH