Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1794 ATGGTGAAAGCTTACCTCCGATACGAGCCGGCGGCGTCGTTCGGCGTAATCGCGTCGGTTGAATCGAACATCACTTACGACAGTTCCGGCAAACACCTCCTCTCTCCGGCACTGGAGAAAATCGGTGTGTGGCACGTGCGTCAGGGCCTTTGCACCAAAACCCTAACTCCTTCTCCTTTTTCTCGTGGACCTTCACTAGCTGTTACTTCCATTGTTTCCTCTCCTTCGTCGCTGATAGCTGCTGGTTACGCTGATGGAAGCATAAGGATTTGGGACTCTGATGCAGGAACGTGTGAGACTACATTGAATGGACATAAGGGAGCTGTTACTGCTCTTCGCTACAACGAGAATGGTTCCTTACTTGCTTCTGGAAGCAAGGATAACGATGTCATTTTATGGGATATGGTTGGCGAGACTGGGCTCTTTCGCCTTCGTGGCCATCGTGATCAGGTGACTGATGTTGTTTTTGTGAGTTCTGGGAAGAAACTTGTTAGTTCCTCCAAAGACAAGTTTTTGAGAGTGTGGGATCTTGATACTCAGCATTGTATGCAAATTGTAGGTGGCCATCATACTGAAATATGGTCCATAGATGTTGATCCCAATGAAAGATACCTGGTCACTGGTTCTGCTGACAAGGAACTTCGTTTTTACTCAATCAAGCATGAGTCTTTGGATGGGCAATCTGTGAATGGAAACAATGCAGTTGGAAGTGGTGATTCTTCCGTTAAAGATAAATGGGAAGTTTTGAGGCAGTTTGGTGAAATTCAGCGGCAAGCCAAGGAAAGAGTTGCAACAGTGCAGTTTAACAAGCCTGGGAATCTCCTAGCTTGTCAAGTAGCAGGGAAGACGGTAGAATTATACCGTGTATTGGATGATGCTGATGCAAAGCGTAAGGCGAAACGCAGGGTTCACCGTAAGAAAGAGAAAAAACATGGCAAAGATGTTTTGGAGGGGACTGAAAATGGAGATAAGAATAATGAAAACAAGGGAGATAATTCTTCCGTGGCTCATGTCCCTGCAGAAACAAGCAACCCTGAAATTACTGTGCCTGATGTTTTTAAGTTGCTGCATACTATTAGAGCTAGCAAAAAGATTTGCTCCATTTCTTTCTGTCCAATCACTCCAAAGAATTCATTGGCTACTTTAGCATTGTCATTGAACAATAATCTGCTTGAGTTTTACTCCATTGAAAGTGGTGAAACCTCAAAAACACTTGCTGTTGAGCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTCACACTTAGTTCGGATAACACTCTTCTGATGTCAACCAGTCATAATGCAGTCAAGATTTGGAATCCAAGCACCGGTTCTTGCCTAAGGACTGTTGATTCTGGGTATGGACTGTGCAGTTTAATTCTCCCCTCTAACAAGTATGGACTTGTTGGAACTAAAGATGGAACATTAGAAATTATTGACATTGGAAGTGGCACTTGTGTTGAAGTAGTGGAAGCTCATGGTGGCTCTGTTCGCTCAATTGCTGCCCTACCAGATAGAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAGTACCAAATTAAGCAAAAACCTGGTCAAGCTACTAAGCAGCTAAGTGTGTCAAATGTTGGTACTATGAAAATGAATGATGATGTTCTTGTGGTTGCAATAAGCCCTGATGCTAAATATATTGCTGTTGCATTGTTGGATAGCACTGTGAAGAGTCTAATTGGGCGAAGCGAAGTTAGAAATTATTTTGGTTTAAGTTCTAGTGGCTTCGTCCTGATGGTTCACTTTGTTGACACATTCAAATTCTTCCTTACATTATATGGCCACAAGCTGCCTGTTCTTTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGGTCTGCAGATAAAAATATAAAGATTTGGGGTTTGGATTTTGGTGATTGTCATAAGTCCATTTTTGCACATGCTGATAGTGTTATGGGAGTGCAATTTGTTCCGAAGACACACTATGTGTTTAGTGTTGGAAAAGATCGGTTGGTAAAATATTGGGATGCGGATAAATTTGAGCATCTGTTAACTCTTGAAGGACATCATGCAGATATTTGGTGTCTTACAATCAGTAATCGTGGTGATTTTATTGTCACTGGATCTCATGACCGTTCCATCCGCCGCTGGGATCGTACTGAAGAACAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCTTTTGAAAACAAGCATGTACCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAAAAAACTCAGGAAACCCTTACTGCAACAGACTTAATTATTGAGAGATTAGACATAGCAGAAGCTGAAAAACAGCGTATTACTGAGCATCAGGAGGACAAAAGTAACAGAAGTGTTGCTGCTTTCCAAGCAAATCCACTTATGAATGGGCTTTCACCTTCGGATTATGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATCTTGAGCAAACATTATTGGCTTTGCCATTTTCTGATGCTTTGAAGCTTCTGGCGTACTTGAAGGAATGGACTTCATATTCTGACAAGATTGAATTAGTTTGCCGCATAGGAACTCTGTTATTGCAGACACATTATAATCAGCTGCTTTCTACGCCTGCTGCCAGACCCGTCTTGACTGCTTTCAGTGACATATTTTACGAACGTGTCAAGGGATGGAAAGATATCTTTGGTTTCAACCTTGCAGCCATGGATCATATCCAGCAAATGATGGCTTCAAGATCAGATGCCCTCTTTAGTGATGCAAGATCTAAACTTCTAGAGATACGTGCTCAACAATCAAAACGTTTAGAAGAAAGATCTGATATGGGAGAAGTGAAGAGGAAGAAGAAGAAGCCGAAGACAACATCGGCATAG 2931 0.421 MVKAYLRYEPAASFGVIASVESNITYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSPFSRGPSLAVTSIVSSPSSLIAAGYADGSIRIWDSDAGTCETTLNGHKGAVTALRYNENGSLLASGSKDNDVILWDMVGETGLFRLRGHRDQVTDVVFVSSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHTEIWSIDVDPNERYLVTGSADKELRFYSIKHESLDGQSVNGNNAVGSGDSSVKDKWEVLRQFGEIQRQAKERVATVQFNKPGNLLACQVAGKTVELYRVLDDADAKRKAKRRVHRKKEKKHGKDVLEGTENGDKNNENKGDNSSVAHVPAETSNPEITVPDVFKLLHTIRASKKICSISFCPITPKNSLATLALSLNNNLLEFYSIESGETSKTLAVELQGHRSDVRSVTLSSDNTLLMSTSHNAVKIWNPSTGSCLRTVDSGYGLCSLILPSNKYGLVGTKDGTLEIIDIGSGTCVEVVEAHGGSVRSIAALPDRNGFVTGSADHDVKFWEYQIKQKPGQATKQLSVSNVGTMKMNDDVLVVAISPDAKYIAVALLDSTVKSLIGRSEVRNYFGLSSSGFVLMVHFVDTFKFFLTLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMGVQFVPKTHYVFSVGKDRLVKYWDADKFEHLLTLEGHHADIWCLTISNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKHVPKEEIPEEGAVALAGKKTQETLTATDLIIERLDIAEAEKQRITEHQEDKSNRSVAAFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLAYLKEWTSYSDKIELVCRIGTLLLQTHYNQLLSTPAARPVLTAFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFSDARSKLLEIRAQQSKRLEERSDMGEVKRKKKKPKTTSA 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 402 440 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 537 575 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 483 522 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 642 681 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 179 218 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 137 176 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 443 480 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 684 723 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 95 134 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 48 92 IPR001680 GO:0005515
Lal1g1794 976 SMART WD40_4 600 639 IPR001680 GO:0005515
Lal1g1794 976 Gene3D - 21 326 IPR015943 GO:0005515
Lal1g1794 976 CDD WD40 405 723 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 649 690 IPR001680 GO:0005515
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 641 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 522 - -
Lal1g1794 976 Pfam WD domain, G-beta repeat 408 440 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 484 521 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 61 92 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 686 723 IPR001680 GO:0005515
Lal1g1794 976 Pfam WD domain, G-beta repeat 605 638 IPR001680 GO:0005515
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 723 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 449 IPR001680 GO:0005515
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 522 IPR001680 GO:0005515
Lal1g1794 976 MobiDBLite consensus disorder prediction 297 343 - -
Lal1g1794 976 Gene3D - 353 597 IPR015943 GO:0005515
Lal1g1794 976 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 75 728 IPR011047 -
Lal1g1794 976 MobiDBLite consensus disorder prediction 310 327 - -
Lal1g1794 976 Gene3D - 598 816 IPR015943 GO:0005515
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 649 681 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Lal1g1794 976 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Lal1g1794 976 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Lal1g1794 976 PRINTS G protein beta WD-40 repeat signature 626 640 IPR020472 -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 723 IPR001680 GO:0005515
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 648 IPR001680 GO:0005515
Lal1g1794 976 CDD WD40 98 522 - -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Lal1g1794 976 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Lal1g1794 976 MobiDBLite consensus disorder prediction 951 967 - -
Lal1g1794 976 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 970 - -
Lal1g1794 976 Pfam Dip2/Utp12 Family 826 926 IPR007148 -
Lal1g1794 976 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Lal1g1794 976 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Lal1g1794 976 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 970 - -
Lal1g1794 976 MobiDBLite consensus disorder prediction 951 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1794 Lal-Chr1 20263926 20273776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1794 604 732 Miscellaneous Gene Families AT5G08390 27.132 2.01e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1794 K14556 - gmx:100775810 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1794 1 20263926 20273776 Lal1g1794 1 20263926 20273776 ECH
Lal11g1180 11 15557033 15565804 Lal1g1794 1 20263926 20273776 LSH