Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1180 ATGGTGAAGGCCTACCTCCGATACGAGCCTGCGGCGTCATTCGGTGTAATCGCTTCCATTGAATCCAACATCACTTACGACAGCTCCGGCAAGCACCTCCTCTCTCCAGCGCTCGAGAAAATCGGCGTGTGGCACGTGCGGCAGGCTGAAAAGAGCTTCACATGCTTCATTGATAAGCAAATAGCTGCTGGTTATGCTGATGGAAGCATAAGGGTTTGGGACTCTGACACAGGAACTTGTGAGACTACTTTGAATGGACATAAGGGAGCTGTTACTTCTCTCCGTTACAATGAAAATGGTTCCTTACTTGCTTCTGGAAGCAAGGATAATGATATCATTTTATGGGATACCGGGCTCTTTCGCCTTCGTGGTCATCGCGATCAGGTGACTGATGTTGTTTTTGTGAGTTCTGGGAAGAAACTTATTAGTTCCTCCAAAGACAAGTTTTTGAGAGTGTGGGATCTTGATACCCAACACTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCATAGATGTTGATCCGGATGAAAGATACCTGGTCACAGGGTTTGCGGACAAGGAACTTCGTTTTTACTCAGTTAAGCATGAATCTGTGTGA 609 0.4598 MVKAYLRYEPAASFGVIASIESNITYDSSGKHLLSPALEKIGVWHVRQAEKSFTCFIDKQIAAGYADGSIRVWDSDTGTCETTLNGHKGAVTSLRYNENGSLLASGSKDNDIILWDTGLFRLRGHRDQVTDVVFVSSGKKLISSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSIDVDPDERYLVTGFADKELRFYSVKHESV 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1180 202 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 199 - -
Lal11g1180 202 SMART WD40_4 37 74 IPR001680 GO:0005515
Lal11g1180 202 SMART WD40_4 77 116 IPR001680 GO:0005515
Lal11g1180 202 SMART WD40_4 157 196 IPR001680 GO:0005515
Lal11g1180 202 SMART WD40_4 117 154 IPR001680 GO:0005515
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 202 IPR001680 GO:0005515
Lal11g1180 202 ProSitePatterns Trp-Asp (WD) repeats signature. 141 155 IPR019775 -
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 84 116 - -
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 157 - -
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 202 - -
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 163 IPR001680 GO:0005515
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 83 IPR001680 GO:0005515
Lal11g1180 202 Pfam WD domain, G-beta repeat 60 74 IPR001680 GO:0005515
Lal11g1180 202 Pfam WD domain, G-beta repeat 78 116 IPR001680 GO:0005515
Lal11g1180 202 Pfam WD domain, G-beta repeat 159 195 IPR001680 GO:0005515
Lal11g1180 202 Pfam WD domain, G-beta repeat 121 154 IPR001680 GO:0005515
Lal11g1180 202 SUPERFAMILY WD40 repeat-like 59 198 IPR036322 GO:0005515
Lal11g1180 202 PRINTS G protein beta WD-40 repeat signature 61 75 IPR020472 -
Lal11g1180 202 PRINTS G protein beta WD-40 repeat signature 103 117 IPR020472 -
Lal11g1180 202 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Lal11g1180 202 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 199 - -
Lal11g1180 202 Gene3D - 119 202 IPR015943 GO:0005515
Lal11g1180 202 Gene3D - 22 118 IPR015943 GO:0005515
Lal11g1180 202 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 116 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1180 Lal-Chr11 15557033 15565804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1180 86 200 Miscellaneous Gene Families AT5G08390 23.333 1.53e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1180 K14556 - gmx:100800955 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1180 11 15557033 15565804 Lal11g1180 11 15557033 15565804 ECH
Lal11g1180 11 15557033 15565804 Lal1g1794 1 20263926 20273776 LSH