Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1750 ATGGCAAAAAAAACAGGTCCTATGTATTACAATGGATATTATCATCTATTTTACCAATACAACCCAAATGGGTCAGTGTGGGGCAACATTGTGTGGGCACACTCAGTATCAAAAGATCTTATAAATTGGAAAGAACTCGAATATGCTCTTTACCCATCCAAACCATTTGACAAGTTTGGGTGCTGGTCTGGGTCAGCCACTGTGGTTCCTGGTAAAGGACCAGTGATTCTCTATACTGGAGTTACTGATGATAAAAACACTGAGGTGCAATGTTATGCCGTACCTGAAGATACATCTGACCCGCTTCTAAGGAAATGGATAAAACCCGATACCTTAAACCCAATTGTCATTGCTGATCGAGAAGTAAATGGTAGCGCTTTCCGTGACCCAACAACAGCATGGTGGAGCAACGATAGACATTGGAGGATGTTGGTTGGTAGTAAAAGGAAACATAGAGGAATTGCCTACTTATATAAGAGCAAGGACTTCATAAAATGGACCAAAGCAAAACATCCAATCCATTCAAAATCAAGTACAGGAATGTGGGAATGTCCTGATTTTTTCCCAGTTTCTTTGGAAAGTAAAGAAGGGTTAGACATGAATAATGTGCATGGGAACAATGTTAAACATGTCTTAAAGAATAGTCTTGATATGACTAGGTTTGAGTACTATACATTAGGGACTTATTTTCCTAAGAAGGATAAGTATGTGCCTGATAACACTTCACAAGATGGTTGGGGTGGACTTAGATATGATTATGGTAACTTTTATGCTTCAAAATCATTCTTTGACCCTAGCAAGAATAGAAGGATTTTGTGGGGTTGGGCAAATGAATCTGATTCTAAGGAAGATGATGTTAATAAAGGTTGGGCAGGAATTCAGGTCCCTTGTTATTATGTGCACCAAATAGAAGCACCCAATGGGCACTTTGGCACATGGGCAATTCCAAGGACCATTTGGCTTGATAGATCTAGGAGACAATTGATACAATGGCCTGTTGAAGAATTAAATAGTCTTAGAGGGAAAGAAGTTAAGATGAACAATCAAAAGCTTAATAAAGGAGATTATGTAGAAGTGAAAGGAGTTACTGCTGCTCAGGTTGATGTGGAAGCTACCTTCACATTTTTAAGCTTGGACAAGGCAGAGACATTTGATCCAAGTTGGGTGAATGCACAGGATCTGTGTGCACAAAAGGGTTCCAAGATTGAAGGTGGGGTTGGACCATTTGGGTTTTTAACTCTTGCTTCACAAGATCTACAAGAGTTTACTCCTGTATTCTTCAAAATTTTCAAAGCTCCAAATAAGCATGTGGTTCTCATGTGCTCTGATGCAACCAGTTCCTCTATTAAGAACAACCTATACAAACCATCATTTGCTGGCTTTCTAGATGTGGATTTATCCAATAGGAAAATTCCTCTTAGGAGTTTGATTGATCACTCAGTAGTGGAAAGTTTTGGAGCTGGAGGGAAAACAAACATATTGTCTAGGGTATATCCAACACTAGCTATAGGGAATCAAGCTCACTTATTTGTGTTCAACAATGGCACTGAGCAAATCAATGTGCAGAACCTTCATGCATGGAGCATGAAAAATGCTGATATACAATGA 1608 0.3918 MAKKTGPMYYNGYYHLFYQYNPNGSVWGNIVWAHSVSKDLINWKELEYALYPSKPFDKFGCWSGSATVVPGKGPVILYTGVTDDKNTEVQCYAVPEDTSDPLLRKWIKPDTLNPIVIADREVNGSAFRDPTTAWWSNDRHWRMLVGSKRKHRGIAYLYKSKDFIKWTKAKHPIHSKSSTGMWECPDFFPVSLESKEGLDMNNVHGNNVKHVLKNSLDMTRFEYYTLGTYFPKKDKYVPDNTSQDGWGGLRYDYGNFYASKSFFDPSKNRRILWGWANESDSKEDDVNKGWAGIQVPCYYVHQIEAPNGHFGTWAIPRTIWLDRSRRQLIQWPVEELNSLRGKEVKMNNQKLNKGDYVEVKGVTAAQVDVEATFTFLSLDKAETFDPSWVNAQDLCAQKGSKIEGGVGPFGFLTLASQDLQEFTPVFFKIFKAPNKHVVLMCSDATSSSIKNNLYKPSFAGFLDVDLSNRKIPLRSLIDHSVVESFGAGGKTNILSRVYPTLAIGNQAHLFVFNNGTEQINVQNLHAWSMKNADIQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1750 535 Pfam Glycosyl hydrolases family 32 C terminal 335 528 IPR013189 -
Lal1g1750 535 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 5 535 - -
Lal1g1750 535 Pfam Glycosyl hydrolases family 32 N-terminal domain 5 332 IPR013148 -
Lal1g1750 535 Gene3D Glycosyl hydrolase domain; family 43 2 345 IPR023296 -
Lal1g1750 535 Gene3D - 346 529 - -
Lal1g1750 535 SUPERFAMILY Concanavalin A-like lectins/glucanases 332 532 IPR013320 -
Lal1g1750 535 SMART glyco_32 6 489 IPR001362 GO:0004553|GO:0005975
Lal1g1750 535 SUPERFAMILY Arabinanase/levansucrase/invertase 6 333 IPR023296 -
Lal1g1750 535 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE PROTEIN 5 535 - -
Lal1g1750 535 CDD GH32_Fruct1-like 6 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1750 Lal-Chr1 19877320 19883123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1750 6 529 Glycoside Hydrolase AT2G36190 62.687 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1750 K01193 - gmx:100777418 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1750 1 19877320 19883123 Lal1g1750 1 19877320 19883123 ECH
Lal11g1247 11 16182661 16185141 Lal1g1750 1 19877320 19883123 LSH