Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1584 ATGATGTCATTGACAAGTAAAAGCATTGCTTTTGTTGGGAAAAACTTGATTTTTGGTGGTTGTTGTTGTAATGCTTCTTTTGATCGTTGCATAGTGAGGAATTATGCAAAGGTGAATGGAGGTAGTAAAATTGTTTGCTGCAAGAGGAGGAGCACTCAGTGTGGTGTTTCTTCTGTTATGAAGATTGTAGAACCAACATTGAATGGTGGAACTCAAGCAATTCAAGGCCTTAATGGATTGGACTTGAAGAATTACTCTGACGCCCCTATTTCCCCAGCTCAGTTGTTTGATGTGGTTGCTGATGATCTGAAAACACTCAATAAAAACCTTCAGTCGATTGTAGGTGCAGAGAATCCAGTTTTAATGTCGGCAGCTGAGCAGATATTTAGTGCTGGTGGGAAGAGGATGAGACCGGCTCTCGTGTTCTTGGTGTCAAGGGCGACAGCAGAGCTACTTGGCTTGAACGAACTTACTGTAAAGCATCGGCGATTAGCAGAGATAATTGAAATGATTCATACTGCAAGTTTGATACACGATGATGTATTAGATGAGAGTGACCTACGGAGAGGGAAGGAAACTGTTCATCAACTATTCGGAACTAGAGTAGCAGTGCTGGCCGGAGACTTCATGTTTGCACAGTCGTCGTGGTATTTAGCCAACCTTGAAAATATTGAAGTCATTAAACTTATCAGTCAGGTGATTAAAGACTTTGCGAGTGGTGAAATAAAGCAAGCTTCTAGCTTGTTTGATTGTGATGTTCAACTCGACGAGTATCTAATTAAGAGTTACTATAAGACAGCTTCATTGATTGCTGCCAGTACAAAAGGAGCTGCAATTTTCAGCGGTGCCGACAACATCATCGTTGAGAAAATGTACGAATATGGAAAGAATCTTGGTCTGTCCTTCCAAGTTGTGGATGACATATTAGATTTCACACAATCAGCAGAGCAACTAGGAAAGCCTGCCGCCACCGACCTTTCCAAAGGTAACCTGACTGCACCAGTTATCTTTGCATTGGAGAAAGAACCGAAATTGAGGGATATCATTGAGTCAGAATTTAGTGAGCCCGGTTCCCTCGACGAGGCCATCGAATTGGTCAAGAGCTGTGGGGGCATTGAAAGAGCACAAGAATTGGCAAAAGAGAAAGCCGATCTTGCTATTCGAAATCTCCAATGCCTACCTCAGAGCACGTTTCGTTTAGCTCTCGAGGATATGGTTGCTTACAATCTTCAACGGATTGCATAA 1245 0.4249 MMSLTSKSIAFVGKNLIFGGCCCNASFDRCIVRNYAKVNGGSKIVCCKRRSTQCGVSSVMKIVEPTLNGGTQAIQGLNGLDLKNYSDAPISPAQLFDVVADDLKTLNKNLQSIVGAENPVLMSAAEQIFSAGGKRMRPALVFLVSRATAELLGLNELTVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKETVHQLFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYYKTASLIAASTKGAAIFSGADNIIVEKMYEYGKNLGLSFQVVDDILDFTQSAEQLGKPAATDLSKGNLTAPVIFALEKEPKLRDIIESEFSEPGSLDEAIELVKSCGGIERAQELAKEKADLAIRNLQCLPQSTFRLALEDMVAYNLQRIA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1584 414 Gene3D Farnesyl Diphosphate Synthase 91 413 IPR008949 -
Lal1g1584 414 Pfam Polyprenyl synthetase 120 365 IPR000092 GO:0008299
Lal1g1584 414 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 12 413 - -
Lal1g1584 414 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 91 413 - -
Lal1g1584 414 CDD Trans_IPPS_HT 116 412 IPR000092 GO:0008299
Lal1g1584 414 SFLD Isoprenoid Synthase Type I 124 408 - -
Lal1g1584 414 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 12 413 - -
Lal1g1584 414 ProSitePatterns Polyprenyl synthases signature 1. 176 190 IPR033749 -
Lal1g1584 414 ProSitePatterns Polyprenyl synthases signature 2. 298 310 IPR033749 -
Lal1g1584 414 SUPERFAMILY Terpenoid synthases 93 412 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1584 Lal-Chr1 18227210 18232461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1584 K05356 - gmx:100805842 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1584 1 18227210 18232461 Lal1g1584 1 18227210 18232461 ECH
Lal11g1488 11 18091610 18095786 Lal1g1584 1 18227210 18232461 LSH