Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1273 ATGGGGAGAGATCCAATTACTCCAATACCTCTCAGACTTGAAATCAAGCGAAAGCTTGCACAAAGATCGGAGAGAGTAAAATCTGTGGATCTACATCCAACAGAACCATGGATTCTTGCAAGTTTATACTCTGGAACTGTCTGTATCTATAACTACCAATCTCAGACCATGGCCAAGTCGTTTGAGGTTACTGAGTTACCAGTCAGGTCATCCAAATTTATTGCACGTAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTCATTCGTGTATATAATTACAATACGATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAACTTTGGGATTGGGAAAAGGGTTGGGCATGTACCCAGATATTTGAAGGGCATTCTCATTATGTCATGCAAGTGACATTCAATCCTAAAGACACAAACACCTTCGCTAGTGCATCTCTTGATCGGACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCATACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATTATCATTACTGGCTCTGAGGATGGTACAGTGCGCATATGGCATTCAACAACGTATAGGCTTGAGAACACATTAAACTACAGTCTTGAAAGAGTTTGGGCTATTGGTTACTTGAAGGGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGTACTATTATGGTTAAACTTGGTCGAGAGGAACCTGTGGCCAGTATGGACAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAACATACGTAGTGTAGGAGCTGATGTCGAGATTGCTGATGGAGAAAGGCTACCTTTGGCTGTTAAGGAGCTGGGCACTTGTGATCTCTACCCACAAAGTTTAAGGCACAACCCAAATGGAAGGTTTGTTGTTGTCTGTGGTGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGGTCCTTTGGTTCGGCACTTGAATTTGTTTGGTCTGTGGATGGAGAATATGCTGTGAGAGAAAGTACATCAAGGGTTAAAATTTTCAGCAAAACTTTCCAGGAAAAGAAGAGTATCCGACCAACATTCTCAGCTGAACGGATATTTGGTGGCACTGTACTAGCGATATGCTCAAATGATTTCATCTGTTTTTATGATTGGGCTGAGTGCAGGTTAATTCGTCGTATTGATGTTAATGTGAAAAATCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTACATCCTCAAGTACAATCGTGATGTTGTTGCAGCTTATCTAGATAGTGGAAGACCTGTAGATGAGCAAGGCGTTGAAGATGCCTTTGAGCTCCTTCATGAAACAAGTGAACGAGTCAGGACAGGGATATGGGTGGGGGATTGTTTTATCTACAACAACTCGTCTTGGAGGCTTAATTATTGTGTTGGTGGTGAGGTAACCACAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTGTATCTGATAGACAAAGAGTTCAATGTCATTGGATACACATTGCTTTTAAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGGGCCAACGAAGTTATACCATCAATTCCTAAAGAGCATCATAACAGCGTGGCTCGATTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTATTGACCCTGACTACCGGTTTGATCTAGCCATACAACTTGGAAGATTAGAGGTTGCAAAGGGTATTGCCACAGAAGTGCAGAGCGAATCTAAATGGAAGCAGCTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCTGAGGACTGTCTAAAGCATGCAATGGATTTGAGTGGCTTGTTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCACAACTTGCAATTCTTGCTAAAGAGCAAGGCAAGCACAACGTTGCATTTCTTTGCTTATTTATGTTGGGTAAACTTGAAGATTGCCTTCAACTCTTGGTCGAAAGGAATCGTATTCCTGAGGCTGCTTTAATGGCTCGATCTTATCTCCCAAGCAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAGGATCTCAATAAGGTTAATTCAAAAGCTGCTGAATCGTTGGCTGATCCTGAAGAGTATCCTAATTTGTTTGAAGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTTCAGAAACAAGAGGTGTTTACTCTCCGGCGGAGGAGTATGTCAATCACGCTGATAAATCACATGTCACCCTTGTTGAAGCATTCAGAATCATGCAGATCGAAGAAGGAGAGCAGCCTCTTGAGAACGGAGATTCTTATCACGAGTTGACGGAACAAAATGGAGAAGAGGATTATCCACAAGAACATGAGGAACAAAATGGAGAAGAGGATTATACACAAGAGTATGAAGAACAAAATGGGGAAGAAAGAAGCCGAGAGGAGACAGTTGTGGTGGACACCGATTCTACAGATGGCGCTGCAGTCCTTGTAAATCGTAATGAGGCAGACGAAGAGTCGGGAGCGAACAAAGCATCCCCGTCAGCGTAA 2826 0.4214 MGRDPITPIPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIYNYQSQTMAKSFEVTELPVRSSKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYSLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGEYAVRESTSRVKIFSKTFQEKKSIRPTFSAERIFGGTVLAICSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVAAYLDSGRPVDEQGVEDAFELLHETSERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLERANEVIPSIPKEHHNSVARFLESRGMIEDALEVAIDPDYRFDLAIQLGRLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEDCLKHAMDLSGLLLLYSSLGDAEGISQLAILAKEQGKHNVAFLCLFMLGKLEDCLQLLVERNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNSKAAESLADPEEYPNLFEDWQVALAVESKASETRGVYSPAEEYVNHADKSHVTLVEAFRIMQIEEGEQPLENGDSYHELTEQNGEEDYPQEHEEQNGEEDYTQEYEEQNGEERSREETVVVDTDSTDGAAVLVNRNEADEESGANKASPSA 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Lal1g1273 941 Gene3D - 598 806 - -
Lal1g1273 941 Pfam WD domain, G-beta repeat 140 179 IPR001680 GO:0005515
Lal1g1273 941 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Lal1g1273 941 Pfam WD domain, G-beta repeat 185 223 IPR001680 GO:0005515
Lal1g1273 941 Pfam WD domain, G-beta repeat 99 135 IPR001680 GO:0005515
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 180 - -
Lal1g1273 941 MobiDBLite consensus disorder prediction 871 941 - -
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 135 IPR001680 GO:0005515
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 135 - -
Lal1g1273 941 PANTHER COATOMER SUBUNIT BETA' 9 883 - -
Lal1g1273 941 MobiDBLite consensus disorder prediction 881 896 - -
Lal1g1273 941 CDD WD40 25 305 - -
Lal1g1273 941 MobiDBLite consensus disorder prediction 897 912 - -
Lal1g1273 941 Pfam Coatomer WD associated region 327 771 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lal1g1273 941 SUPERFAMILY WD40 repeat-like 235 504 IPR036322 GO:0005515
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Lal1g1273 941 Gene3D - 19 308 IPR015943 GO:0005515
Lal1g1273 941 PIRSF Beta'-COP 10 908 IPR016453 -
Lal1g1273 941 SUPERFAMILY WD40 repeat-like 11 305 IPR036322 GO:0005515
Lal1g1273 941 SMART WD40_4 226 265 IPR001680 GO:0005515
Lal1g1273 941 SMART WD40_4 54 93 IPR001680 GO:0005515
Lal1g1273 941 SMART WD40_4 139 179 IPR001680 GO:0005515
Lal1g1273 941 SMART WD40_4 182 223 IPR001680 GO:0005515
Lal1g1273 941 SMART WD40_4 12 51 IPR001680 GO:0005515
Lal1g1273 941 SMART WD40_4 96 135 IPR001680 GO:0005515
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 232 IPR001680 GO:0005515
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Lal1g1273 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 264 - -
Lal1g1273 941 PANTHER COATOMER 9 883 - -
Lal1g1273 941 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Lal1g1273 941 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Lal1g1273 941 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1273 Lal-Chr1 14107462 14120091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1273 74 317 Miscellaneous Gene Families AT5G08390 25.610 5.07e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1273 K17302 - gmx:100797508 1731.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1273 1 14107462 14120091 Lal1g1273 1 14107462 14120091 ECH
Lal1g1273 1 14107462 14120091 Lal18g0191 18 1569994 1581734 LSH
Lal10g1144 10 18151706 18162604 Lal1g1273 1 14107462 14120091 PCT
Lal1g1273 1 14107462 14120091 Lal10g1144 10 18151706 18162604 PCT