Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0805 ATGTGTCAATGCAACATTAAAGACTTAGAACAACAAAACAACATACTCACCAAACCATTGATATCAAAACAAGAACAAAACAAAAACCATATTTCTGATGCATTCAAGGAAGTGATTTCAATAAACAAAATAGCTCTCCCTATGATACTAACTGGTATCCTTCTCTATTGCCGTTCAATGATCTCAATGCTTTTCCTTGGCCACCTTGGTGAGTTAGCCTTAGCAGGTGGCTCATTAGGACTTGGTTTTGCAAACATCACTGGCTATTCAATCCTTTCTGGTCTTGCAGTTGGAATGGAACCCATTTGTGGACAAGCATTTGGTGCAAAAAGATTCAATCTTTTAGGACTATGCCTTCAGAAAACTATACTTTTGCTTCTATTGACATCTATTCCTATAACTCTTCTTTGGCTTTACATGAAGCAAATACTTCTTTTTTGTGGCCAAGATGAAGGTATAGCCACACAAGCACAATCATATCTTTTTTATTCCATTCCTGACCTCATAGCACAATCTCTTTTACACCCTTTAAGGATTTACCTTAGAACCCAATCCATTACCCTTCCTCTCACCCTTTGTGCCATCTTTTCAATTCTCCTTCACATACCCATCAACTATTTTCTTGTCTCTCACCTTAACTTGGGACTCAAAGGTGTTGCTCTTAGTGGGGTGTGGACAAATTTCAACCTTGTAGCATCTTTGATTCTATACATCATTTTCTCTGGCACTCATAAGAAAACATGGGGTGGTTTTTCTCATGAGTGCTTCACACAATGGAAATCTCTTCTCAATTTAGCCATCCCAAGCTGCATTTCTGTGTGCCTTGAATGGTGGTGGTATGAGATCATGATTTTGCTTTGTGGGTATTTGATTAACCCAACTGCAACTGTTGCATCAATGGGCATTTTGATCCAAACCACTTCTCTGCTTTACATTTTTCCATCATCACTAAGCTTTAGTGTTTCCACAAGGGTTGGGAACAAACTAGGTGCACAAAAGCCTTCAAAGGCAAGGCTTACTGCAATTGTGGGCCTCTTTTGCAGCTTCATATCAGGTCTCTCAGCCCTTGTTTTTACCCTTATGGTTAGGAACATTTGGGCTAGCATGTTCACAAGGGATAAAGAGATTATAACATTGACATCTTTGGTGTTACCTATAATAGGTCTTTGTGAGCTTGGAAATTGTCCACAAACAACAGGTTGTGGGATTCTAAGAGGCACAGCAAGGCCTAAAGTTGGTGCATATATCAACTTGGGTTGCTTTTATCTTGTGGGAATGTCTGTGTCAGTTTGGCTAGCTTTCTTTGCTGGTTTTGATTTTCAAGGTTTATGGCTTGGCCTACTTGCTGCCCAAGGTTCATGTTCTATTACTATGTTGGTTGTTCTGAGTCAAACAGATTGGGAAGTTGAGGCTCAAAGATCAGAGAAACTAACAGGAATTGGAGGTGGTGGTGAAGTTTATGAGAATCAACAAGAGGCTGTTGATGATGAGAAGAAGGTTACCAAGGTTGAAAGCAAGGAAGATTTCTTGCCATTATTAGAAAATTAA 1548 0.3941 MCQCNIKDLEQQNNILTKPLISKQEQNKNHISDAFKEVISINKIALPMILTGILLYCRSMISMLFLGHLGELALAGGSLGLGFANITGYSILSGLAVGMEPICGQAFGAKRFNLLGLCLQKTILLLLLTSIPITLLWLYMKQILLFCGQDEGIATQAQSYLFYSIPDLIAQSLLHPLRIYLRTQSITLPLTLCAIFSILLHIPINYFLVSHLNLGLKGVALSGVWTNFNLVASLILYIIFSGTHKKTWGGFSHECFTQWKSLLNLAIPSCISVCLEWWWYEIMILLCGYLINPTATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGAQKPSKARLTAIVGLFCSFISGLSALVFTLMVRNIWASMFTRDKEIITLTSLVLPIIGLCELGNCPQTTGCGILRGTARPKVGAYINLGCFYLVGMSVSVWLAFFAGFDFQGLWLGLLAAQGSCSITMLVVLSQTDWEVEAQRSEKLTGIGGGGEVYENQQEAVDDEKKVTKVESKEDFLPLLEN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0805 515 CDD MATE_eukaryotic 37 473 IPR045069 GO:0042910|GO:1990961
Lal1g0805 515 Pfam MatE 268 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal1g0805 515 Pfam MatE 47 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal1g0805 515 TIGRFAM matE: MATE efflux family protein 47 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal1g0805 515 PANTHER PROTEIN DETOXIFICATION 25 489 - -
Lal1g0805 515 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0805 Lal-Chr1 5501540 5503087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0805 K03327 - gmx:100788027 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0805 1 5501540 5503087 Lal2g0895 2 5911825 5913405 ECH
Lal1g0805 1 5501540 5503087 Lal1g0805 1 5501540 5503087 ECH
Lal2g0895 2 5911825 5913405 Lal1g0805 1 5501540 5503087 LSH