Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0544 ATGCCCACCACGTTATCCTCTTATTCCAATGGCGATGAAGCCCAGGACCACCGAACACCGCTCCTTCCTCCGTCGTTGAAACCCGCCGGGAACCAAGAACTAGAAAAGCTATGCATCGACGAGATGCTGCAGAAGTATTGCGGCGAGTTCGGGCGTTGGCAGCTGAGACACTTCATCCTAACAACCCTTGCGTGGGCCTTGGAAGCCTTTCACACTATGGTCATGATATTTTCGGACCGTGAACCTGAGTGGCGGTGTCGTAATGGTGAGGCTGGTTTTGGTTGTGATCCCTATGCTAAGAGCGTGTGCCAGCTTGAACCTGGTTCGTGGAAGTGGGTTGGAGATAAGGCCGCAACTACTGTTGCGGAATGGGGTTTGGTTTGTGGTGACAAATTCAAGGTTGGACTTGTTCAGGCCTTGTTCTTCGGTGGCTGCATGATTGGTGCTGGAATATTTGGCCATCTCTCAGATTCCTCATTAGGAAGAAAAGGCTCTCTTATAGTTGTTTGTATCCTAAACACCATTTTTGGCACCTTAACATCGTTTTCTCCAAACTACTGGACCTATGTCTTCTTCCGCCTCCTCACCGGTATTAGCACCGGCGGCGTAGGCCTATGCGCCTTCGTCCTCGCCACCGAGCCTGTGGGCCTTAAAATGCGCGGCGTCGCTGGCATGTGCACATTCTACTTCTTCTCTGGCGGCATAGTCATCCTTTCTGGCATTGCTTACATCTTCCAAACATGGCGTAACCTTTACATTGCCACATCTTTACCCTCCCTTCTCTTCATACTCCTCGTTCTTCCCTTCATCTCTGAATCACCCAGATGGTACCTCATACGAGGAAGAATCAAAGAAGCCATGAATGTCATGTCCACCATTGCTACCTCCAACGGTAACCACCTCCCACAAGGTGTTCTTCTAACCCTAGATGAAGAATCATCATCAGTATCACCATTATCATCATCAACAAACCTAGACCAAGCATATATGGATCATATGGAGAACAAAGATGCTGTGACTGGGTCTCTTTTGGATGTAATTCGTTCACCATTAACACGTACCCGTTTGTTTCTAGCAGTGGTAATAAACTTCCTTTGTTCTGTTGTGTATTATGGTTTGAGCCTAAACGTGGTGAACATGGAAACTAACATTTATCTTAATGTGATACTAAATGCTGTGGCTGAGTGTCCAGCGTTCATGATAACAGCGTTATTGTTGGATAGGTTAGGAAGGAAACCCTTAACCATAGGAACATTATGGTTCAGTGGGTTCTTCTGCTTCATTGGGGCTTTGGTTAGTAATGTTGGAGTGTGGAAGGGAGTGAAAATGGTGTGTGGAATTTTAGGGATATTTGGAATGGCGGGGACATATAATTTGCTATTTATTTACACTACTGAATTGTTCCCAACGGTGGTGAGGAACGCGGCGCTTGGGTGCGCCACACAGGCGGCGCAGATGGGTGCAATATTGGCGCCGATGACGGTTGTTTTGGGTGGGTGGTTGCCATTTGGAGTGTTTGCATTTTGTGGGATAGTTGGTGGGATATTTGCATTTTACCTACCTGAGACACTAAACCAACCTCTCTATGATACAATGGCTGGATTAGAGGGGTAG 1614 0.4721 MPTTLSSYSNGDEAQDHRTPLLPPSLKPAGNQELEKLCIDEMLQKYCGEFGRWQLRHFILTTLAWALEAFHTMVMIFSDREPEWRCRNGEAGFGCDPYAKSVCQLEPGSWKWVGDKAATTVAEWGLVCGDKFKVGLVQALFFGGCMIGAGIFGHLSDSSLGRKGSLIVVCILNTIFGTLTSFSPNYWTYVFFRLLTGISTGGVGLCAFVLATEPVGLKMRGVAGMCTFYFFSGGIVILSGIAYIFQTWRNLYIATSLPSLLFILLVLPFISESPRWYLIRGRIKEAMNVMSTIATSNGNHLPQGVLLTLDEESSSVSPLSSSTNLDQAYMDHMENKDAVTGSLLDVIRSPLTRTRLFLAVVINFLCSVVYYGLSLNVVNMETNIYLNVILNAVAECPAFMITALLLDRLGRKPLTIGTLWFSGFFCFIGALVSNVGVWKGVKMVCGILGIFGMAGTYNLLFIYTTELFPTVVRNAALGCATQAAQMGAILAPMTVVLGGWLPFGVFAFCGIVGGIFAFYLPETLNQPLYDTMAGLEG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0544 537 Pfam Sugar (and other) transporter 130 529 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lal1g0544 537 Gene3D MFS general substrate transporter like domains 117 536 IPR036259 -
Lal1g0544 537 SUPERFAMILY MFS general substrate transporter 130 528 IPR036259 -
Lal1g0544 537 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 39 536 - -
Lal1g0544 537 ProSitePatterns Sugar transport proteins signature 2. 195 220 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal1g0544 537 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 39 536 - -
Lal1g0544 537 MobiDBLite consensus disorder prediction 1 28 - -
Lal1g0544 537 ProSitePatterns Sugar transport proteins signature 1. 402 418 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal1g0544 537 ProSiteProfiles Major facilitator superfamily (MFS) profile. 57 525 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0544 Lal-Chr1 3503891 3507639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0544 15 536 Organic Solute Cotransporters AT3G20660 66.476 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0544 K08202 - gmx:100814182 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0544 1 3503891 3507639 Lal1g0544 1 3503891 3507639 ECH
Lal10g0637 10 14179427 14184992 Lal1g0544 1 3503891 3507639 PCT
Lal1g0544 1 3503891 3507639 Lal10g0637 10 14179427 14184992 PCT