Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0481 ATGGCCACTGTTACTTCTTATTTATCTCTTTCCACTCTCACTCAATCTTCCCAAACCAAACAAACCCTCTCATCCACTCGCTTCCCTTTCCCCAATTCCGATTCCTTTCGATTGCGCTTCAATTTCTCATCCAATTCTGTACAACCTTTTCGACCTTCCAACCCCCCTTCCAATTTTGTTATTCGCTGCTCCTCTTCCGTCACAGATATTCCAACTGTTTCTGAGACAAAGTTGAATTTCCTCAAGGCATATAAGAGACCAATCCCTAGTATCTACAACTCTGTGCTGCAGGAGCTCATTGTTCAGCAACATTTGATGAGATACAAGAAATCATACCGTTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTATATGATCAACTCATGGAAGGGTATCCTAGCGACGAGGATAGAAATGCCATCTTCCAAGCATACATTAAATCATTGAATGAAGATCCAGACCAATACAGAGTAGATGCACAGAAGTTGGAAGAGTGGGCTCGTGTTCAAAACTCAACTTCCTTGGTTGACTTTTCCTCCAAAGAAGGAGAAATTGAGGGGATATTAAAGGATATTGCAGAAAGAGCAGGAGGGAAGGGAGAGTTCAGTTATAGCCGTTTCTTTGCAATAGGCCTCTTTCGCCTTCTTGAGTTGGCAAATGCAATGGAACCAGCAATTTTGGAAAAGCTTTGTGCAGCTTTGAACATCAACAAAAGAAGCGTTGACCGGGACTTGGACGTGTATCGTAATTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGCTCCTAAGGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGTCTGAACCACAAAAGGCTAATGAGGCCATTACAAAATGTTTGGGCGAACAACAATTTTCTGGCCTATATTAA 903 0.4186 MATVTSYLSLSTLTQSSQTKQTLSSTRFPFPNSDSFRLRFNFSSNSVQPFRPSNPPSNFVIRCSSSVTDIPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMEGYPSDEDRNAIFQAYIKSLNEDPDQYRVDAQKLEEWARVQNSTSLVDFSSKEGEIEGILKDIAERAGGKGEFSYSRFFAIGLFRLLELANAMEPAILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERSEPQKANEAITKCLGEQQFSGLY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0481 300 Hamap Protein Thf1 [thf1]. 67 275 IPR017499 GO:0010207|GO:0015979
Lal1g0481 300 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 68 274 IPR017499 GO:0010207|GO:0015979
Lal1g0481 300 Coils Coil 249 279 - -
Lal1g0481 300 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 288 - -
Lal1g0481 300 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 288 IPR017499 GO:0010207|GO:0015979
Lal1g0481 300 Pfam Thylakoid formation protein 72 277 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0481 Lal-Chr1 3025975 3030225 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0481 - - aip:107632658 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0718 10 14925762 14929023 Lal1g0481 1 3025975 3030225 PCT
Lal1g0481 1 3025975 3030225 Lal10g0718 10 14925762 14929023 PCT