Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0718 ATGGCAGCTCTCACTTCTTTGTCTTTTTCATCACTGTCTCAATGTTCTGAAAGAAAAACAAACATATCCTCTACTCGTTTCTTAGGTTCAACTTCTAAGGCTTATGGGTTTCGAACCACTTTCTCGTACCATTTTGGGGGTCTTATAGCTTCAACTTCATCACCTAAAATGGTTATTCAATGCATGTCTTCTGTGTCAGATCCTCCCACTGTTTCCGAGACAAAACTAAATTTCCTCAAGGCATATAAGCGACCGATCCCTAGCATCTACAACACTCTGCTGCAGGAGCTCATTGTCCAGCAGCATTTAATGAGATACAAGAAATCATACCGTTACGACCCTGTATTTGCTCTTGGTTTTGTCACTGTATTTGATCAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCAATCTTCGTAGCTTATATTGAGGCGTTGAAGGAAGATCCAGAACAATACAGAACAGATGCAAAGAAGTTGGAAGAGTGGGCTAAGGCTCAAAATTCAACATCACTGGTTGAGTTTTCATCCAAAGAAGGAGAAATTGAGGGGATCTTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGAGATTTCAGTTATAGTCGTTTCTTCGCAGTAGGACTCTTCCGTCTTCTTGAGTTGGCAAAAGCAACAGAACCAACAAGTTTGGAAAAGCTATGTGCTGCTTTGAGCATCAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTGCTTTCCAAACTGGTTCAAGCAAAAGAGCTGCTAAAGGAATATGTTGAGAGGGAAAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAGAAAGCTAATGAGGCCATGGGCATTACAAAATGA 870 0.4138 MAALTSLSFSSLSQCSERKTNISSTRFLGSTSKAYGFRTTFSYHFGGLIASTSSPKMVIQCMSSVSDPPTVSETKLNFLKAYKRPIPSIYNTLLQELIVQQHLMRYKKSYRYDPVFALGFVTVFDQLMEGYPSDEDRDAIFVAYIEALKEDPEQYRTDAKKLEEWAKAQNSTSLVEFSSKEGEIEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELAKATEPTSLEKLCAALSINKRSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKREERAEPQKANEAMGITK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0718 289 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 67 272 IPR017499 GO:0010207|GO:0015979
Lal10g0718 289 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 285 IPR017499 GO:0010207|GO:0015979
Lal10g0718 289 MobiDBLite consensus disorder prediction 268 289 - -
Lal10g0718 289 Coils Coil 247 277 - -
Lal10g0718 289 Hamap Protein Thf1 [thf1]. 65 273 IPR017499 GO:0010207|GO:0015979
Lal10g0718 289 Pfam Thylakoid formation protein 70 275 IPR017499 GO:0010207|GO:0015979
Lal10g0718 289 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0718 Lal-Chr10 14925762 14929023 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0718 - - gmx:100814341 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0718 10 14925762 14929023 Lal10g0718 10 14925762 14929023 ECH
Lal10g0718 10 14925762 14929023 Lal1g0481 1 3025975 3030225 PCT
Lal1g0481 1 3025975 3030225 Lal10g0718 10 14925762 14929023 PCT