Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0403 ATGCAACCAGCATTAGCAGCCATGGCATCCCACACTGTGCTATCACCTTTCCCGAACCCATTTCTCAATTCATCTTTCTCCGCTCTCTCTTTCAAGCTCTCTCCTCAATCCCTAACCCTAAAAGCTACCACCTCCTTCTCCAAGCCCCTCACCGTGGCCGCCGCCGCTAAGAAAGCCGTCGCCGTCCTCAAGGGAAACTCCGCCGTCGAAGGCGTCGTCACCCTCACCCAAGAAGATGATGGCCCAACAACCGTTAATGTTCGTGTTAGTGGTCTTACCCCAGGGCTTCATGGTTTTCACTTGCATGAGTATGGTGATACCACCAATGGCTGCATTTCAACAGGACCACATTTTAATCCTAATAAGCTAACGCATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGGTTGCAGAGGCGACAATTGTGGATAACCAGATACCACTTACTGGCCCCAATTCAGTAGTTGGAAGAGCCTTAGTGGTTCATGAGCTTGGGGATGACCTTGGAAAGGGTGGCCATGAACTTAGTTTGACCACTGGAAATGCTGGTGGAAGATTAGCTTGTGGTGTGGTTGGTTTGACTCCAGTATAA 627 0.504 MQPALAAMASHTVLSPFPNPFLNSSFSALSFKLSPQSLTLKATTSFSKPLTVAAAAKKAVAVLKGNSAVEGVVTLTQEDDGPTTVNVRVSGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEVRHAGDLGNIVANADGVAEATIVDNQIPLTGPNSVVGRALVVHELGDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0403 208 PRINTS Cu-Zn-superoxide dismutase family signature 98 120 IPR001424 GO:0006801|GO:0046872
Lal1g0403 208 PRINTS Cu-Zn-superoxide dismutase family signature 134 143 IPR001424 GO:0006801|GO:0046872
Lal1g0403 208 PRINTS Cu-Zn-superoxide dismutase family signature 153 175 IPR001424 GO:0006801|GO:0046872
Lal1g0403 208 PRINTS Cu-Zn-superoxide dismutase family signature 178 204 IPR001424 GO:0006801|GO:0046872
Lal1g0403 208 Gene3D Superoxide dismutase, copper/zinc binding domain 54 207 IPR036423 GO:0006801|GO:0046872
Lal1g0403 208 CDD Cu-Zn_Superoxide_Dismutase 65 200 IPR001424 GO:0006801|GO:0046872
Lal1g0403 208 Pfam Copper/zinc superoxide dismutase (SODC) 69 203 IPR001424 GO:0006801|GO:0046872
Lal1g0403 208 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 192 203 IPR018152 -
Lal1g0403 208 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 98 108 IPR018152 -
Lal1g0403 208 SUPERFAMILY Cu,Zn superoxide dismutase-like 58 205 IPR036423 GO:0006801|GO:0046872
Lal1g0403 208 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 46 206 - -
Lal1g0403 208 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 46 206 IPR024134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0403 Lal-Chr1 2477074 2480268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0403 K04565 - gmx:100815376 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0403 1 2477074 2480268 Lal1g0403 1 2477074 2480268 ECH
Lal1g0403 1 2477074 2480268 Lal2g0315 2 1879366 1882273 LSH