Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0396 ATGGGTCACAAGAACAAAACTGACGGTGAAAACAACATGACCGCCACCACCACCATCACGGTGGTCTTGAAGGTGGACCTCCACTGTGACGGTTGCGCTTCCAAAATTACCCGCAATCTTCGTGCATTTCAAGGCACTACTACTACTACTACTATCACTACTATTATTCACTCTCTCTGTTTCATCTTCGGTGTTGAGAGTGTGAAGGTGGAGAACGACACCGGAAAAATCACTGTCACCGGAATTGTTGACCCTGTCAATGTGAGGGACAAGCTGGCTATGAAGACTAAGAAGAAGGTTGACCTTCTCTCTCCACAACCCAAGAATCAAAAGGAAAAGGAAAAGGAAAAAGAAAAAGAGAAAGACAATAAACCCACAGAGAAAGAGCCTCCGGTGACCACGGTGGTTCTCAAGGTGTCACTGCACTGCCAGGGATGCATTGATAGGATTACCAAGATTGTCTACAAAACCAAAGGAGTTCATAACATGTCTATTGAGAAAGAGAAGGACACGATTAGTGTGAAGGGGATAATGGATGTGAAGGCTTTGGTTGAGGATTTGATTAACAAGCTGAAGAGGAAGGTTGAGGTTGTCCCACCCAAGAAAGAGAAGAGCAACGACAAGGAAGGTGAAGTTGGTGGCGGTGGCGGTGGTGACAAAGAGGGAGGAGGCAAGAAAAAGAACAAGGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGAAATGGAGAAGGGGAAGATGGAGTATTTGGCACCTCCTGCTTTTGCTTTTGCATATCCATACCCATATGCCAATGTTGGAGGTGTTAATTATGCACCATTCTACCCAGAGAACTATCAATTGCAAGCACCAGCACCACAGATTTTCAGTGATGAAAACCCAAATGCTTGTTCTGTCATGTGA 909 0.4609 MGHKNKTDGENNMTATTTITVVLKVDLHCDGCASKITRNLRAFQGTTTTTTITTIIHSLCFIFGVESVKVENDTGKITVTGIVDPVNVRDKLAMKTKKKVDLLSPQPKNQKEKEKEKEKEKDNKPTEKEPPVTTVVLKVSLHCQGCIDRITKIVYKTKGVHNMSIEKEKDTISVKGIMDVKALVEDLINKLKRKVEVVPPKKEKSNDKEGEVGGGGGGDKEGGGKKKNKGSGGGGGGGGGGGEMEKGKMEYLAPPAFAFAYPYPYANVGGVNYAPFYPENYQLQAPAPQIFSDENPNACSVM 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0396 302 MobiDBLite consensus disorder prediction 97 131 - -
Lal1g0396 302 CDD HMA 136 193 IPR006121 GO:0046872
Lal1g0396 302 Gene3D - 15 110 - -
Lal1g0396 302 Pfam Heavy-metal-associated domain 137 193 IPR006121 GO:0046872
Lal1g0396 302 CDD HMA 22 100 IPR006121 GO:0046872
Lal1g0396 302 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3 53 302 - -
Lal1g0396 302 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3 8 48 - -
Lal1g0396 302 Gene3D - 132 204 - -
Lal1g0396 302 MobiDBLite consensus disorder prediction 199 242 - -
Lal1g0396 302 MobiDBLite consensus disorder prediction 199 227 - -
Lal1g0396 302 SUPERFAMILY HMA, heavy metal-associated domain 17 90 IPR036163 GO:0046872
Lal1g0396 302 SUPERFAMILY HMA, heavy metal-associated domain 131 195 IPR036163 GO:0046872
Lal1g0396 302 MobiDBLite consensus disorder prediction 97 128 - -
Lal1g0396 302 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 8 48 IPR044594 GO:0046872
Lal1g0396 302 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 53 302 IPR044594 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0396 Lal-Chr1 2428980 2430832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0396 - - pvu:PHAVU_011G084200g 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0396 1 2428980 2430832 Lal1g0396 1 2428980 2430832 ECH
Lal10g1223 10 18571879 18573258 Lal1g0396 1 2428980 2430832 PCT
Lal1g0396 1 2428980 2430832 Lal10g1223 10 18571879 18573258 PCT