Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0371 ATGTTGCATAGGATCAACACCGCAAGGTCTCTTTGTGCTACGTTTTTCAGAACCAAACCTCACTCTGCTGCTGCTGCTTTCTCCACTTCCTTGCTCTTCGATGAAACTCAGATACAGTTCAAAGAAAGTGTCTCTCAGTTTGCAACAGAAAACATTGCCCCTCATGCTTCAAAAATTGACCACACAAATTACTTTCCAAAGGAGATTAACCTATGGAAAAGCATGGGAGAATTTAATCTCCATGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGTCTGGGGTACTTGTATCATTGTATAGCAATGGAAGAGATAAGCCGTGCTTCAGGATCCGTTGGTCTTTCATACGGTGCTCATTCAAACCTGTGTATCAATCAGCTGGCGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATACTTGCCAAAGCTTATCTCTGGGGATCACGTGGGAGCTTTGGCAATGAGTGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGACCGTGTAGATGGGGGCTACGTACTTAATGGGAACAAGATGTGGTGTACTAACGGCCCGGTTGCTCAAACATTAGTTGTCTATGCAAAAACAAACACAACAGCTGGGTCAAAAGGAATCACTGCATTCATCATCGACAAGGGAATGCCCGGATTCAGTACTGCCCAGAAATTAGATAAACTCGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAAAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGTGTCTATGTTATGATGTCTGGATTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCCCTCGGCATAATGCAGGCATGCCTTGATGTCTGTCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCGTCCTATTGGAGAGTTCCAGTTTATACAGGGGAAAATTGCTGACATGTATACTTCTTTACAGGCCTCAAGGGCTTATGTGTATTCTGTAGCTCGGGATTGTGACAGTGGAAAAGTTGACCCAAAGGATTGTGCTGGAGCTATACTTTGTGCTGCAGAAAGAGCAACACAAGTTGCTTTGCAGGCCATACAATGTTTAGGTGGGAACGGCTATGTAAATGAGTATCCAACTGGTCGTTTCCTGAGAGACGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGCGAGCTCTTCAAGGAACAATGA 1236 0.4474 MLHRINTARSLCATFFRTKPHSAAAAFSTSLLFDETQIQFKESVSQFATENIAPHASKIDHTNYFPKEINLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLARNGSPAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTNTTAGSKGITAFIIDKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVCLPYVRQREQFGRPIGEFQFIQGKIADMYTSLQASRAYVYSVARDCDSGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRFLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0371 411 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 4 411 - -
Lal1g0371 411 CDD IVD 33 409 IPR034183 GO:0003995
Lal1g0371 411 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 366 385 IPR006089 GO:0003995
Lal1g0371 411 Pfam Acyl-CoA dehydrogenase, middle domain 152 247 IPR006091 GO:0016627
Lal1g0371 411 Pfam Acyl-CoA dehydrogenase, C-terminal domain 259 407 IPR009075 GO:0016627
Lal1g0371 411 Gene3D - 264 407 - -
Lal1g0371 411 Gene3D - 151 263 IPR046373 GO:0016627
Lal1g0371 411 PIRSF PIGM 29 134 - -
Lal1g0371 411 PIRSF PIGM 161 411 - -
Lal1g0371 411 Pfam Acyl-CoA dehydrogenase, N-terminal domain 35 148 IPR013786 GO:0016627|GO:0050660
Lal1g0371 411 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 257 409 IPR036250 GO:0016627
Lal1g0371 411 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 154 166 IPR006089 GO:0003995
Lal1g0371 411 PANTHER ACYL-COA DEHYDROGENASE 4 411 - -
Lal1g0371 411 Gene3D - 25 149 IPR037069 GO:0016627|GO:0050660
Lal1g0371 411 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 27 270 IPR009100 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0371 Lal-Chr1 2237137 2243152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0371 2 411 Acyl Lipid Metabolism Gene Families AT3G45300 82.683 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0371 K00253 - gmx:100794259 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0371 1 2237137 2243152 Lal1g0371 1 2237137 2243152 ECH
Lal1g0371 1 2237137 2243152 Lal2g0277 2 1625102 1630933 LSH