Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0271 ATGGCCGTCAACGATGCTGATCAATCAAACAAGTCTCACAGGACCCGTCAATCTGGTGCCAAAAAGGATAAGAAGAAGCTGAAGAAGAAAAAGGAGCAAGATTCTGATGATGACCAGAAACAGCTTAACCCTAAGGCATTCGCTTTTTCTTCCTCCAACAAAGCCAAGCGCTTGCAATCACGCGCCGTCGAGAAAGAGCAGCGCCGTCTTCATGTTCCCATCATTGACCGCTCTTATGGTGAACCTGCTCCTTTCGTCATCGTTGTGCAGGGTCCACCCCAGGTTGGGAAGTCACTGTTGATAAAGTCTCTGGTTAAACATTATACGAAACAAAATTTACCTGAAGTTCGAGGTCCAATTACTATTGTGTCAGGAAAGCAAAGGCGGCTTCAGTTTGTGGAATGTCCAAATGATATCAATGGCATGATAGATGCAGCAAAGTTTGCTGATTTAGCACTGCTTCTTGTAGATGGGAGTTATGGCTTTGAAATGGAGACCTTTGAATTCCTGAACATTTTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTTACTCATCTTGATCAGTTCAAGGATGCAAAAAAGTTGAGGAAAACAAAGCAACGCCTTAAACACCGGTTTTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGCCTTATTAATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTCGCTCGATTCATTTCAGTGATGAAGTTTCAGCCTATATCTTGGCGAACATCACACCCATATGTTTTGGTAGATCGTCTCGAAGATGCCACTCCTCCCGAAAAAGTGCATCAAAATAAGAAATGTGACAGAAAAGTCATACTTTATGGTTATCTTAGAGGCTGTAATCTGAAAAAGGGGCATAAGGTGCACATAGCTGGAGTGGGTGATTACAGTTTACCTAGTATTACTGCTTTACCAGACCCTTGTCCTCTTCCATCTGCTGCAAAAAAGAAAGGACTGCGCGATAAGGAAAAGTTATTCTATGCTCCAATGTCTGGCCTTGGGGATCTTATGTATGACAAAGATGCTGTATACATAAATATCAATGATCACCTTGTTCAGTTCTCAAAAGTTGATGATGAAAACTCAGCCATGACGAGCAAAGGAAAAGACAGAGATGTTGGGGAAGTTTTGGTGAAATCACTACAGAATACCAAATACTCAATTAATGAAAAGCTGGAGAACAGCAGTATCAATCTTTTTGGTCAAAAGCCGAAAGTGTCACCAGAAGATCTAGCTGATACATGGGATGATATAGCTGGAAAAGATGGTGAAGATAATAATGAAGTGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGCTGATGCCATGACAAAGAGTGAAGCTTCTGGTTCTGAGGATGAAGATGGTGATGCATCTGATAGTAAAACTACCCCAGGAGACCACTTAAAAGAACACATTGAGTTTATAGATGGGAGACGAAGAAGAGGAGTGATCTTTGGAAGTGGTGTTAATCAAAACGAGCTGACGGATTTAGAAGAAGAGGATGGTGCTGCCAGTGATGACGTGGCATCTTCTGATTCAGAATCTTCAAAAGCAGAGGAGGAGGAGGATGACGACAACAGTGATGATGACAAAGATGAAGATTATGACATGGGAAATGTCTCAAAGTGGAAAGAATCTTTGGCAGAAAGAACTCTCTCACGAAAAACTCCTAGTTTGATGCAACTTGTCTATGGAGAATCTACTGTTAATTCAACCTCTATAGACAATGGGAATGATAATAGCGAGGATGATGAAAATGAAGAGGACTTTTTTAAGCCTGTAGAAGAAGTTAAAAAGAGCACAAGAGATGGTTTGAACGATGGAATGGTCAACATTGATGATTGTTCCAAGTGTGCACATTTTGTGGATCAGAGATGGGATGAGAAAGATAACAAGGATATCCGCAACCGTTTTGTGACCGGAAATTTGGCAAAAGCTTCACTCAGTAACCCACTACCAAGACCTAATACTGAAGAGGACAATGATGATGTGTTTGGTGATTTTGAAGATTTAGAAACAGGAGAAAAATACGAGAATATTCAGACAGATGATGCTTTTGCTGCAACAATACCCAAGGGAGATGATTTAGAAGCTGAGCAGCAGCGTAGGATTAAGAAGCTTGCTCTGCCAGAAGAAGATGATGTTAATGAAAATGAGGTCAAATTACGTCGTGGTCAAATTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAGCTTCGGAAACAAATGAATATAGCTGAACTGGATGAGCTTGATGAGGCTGCCAGAATAGAGACAGAGGGCTTCCGAACAGGGACATACCTAAGATTGGAGATTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTGCCATCCAGTATTGGTGGGAGGGGTTGGTCTCGGGGAGGAAAATGTTGGATACATGCAGGCCAGACTAAAGCGCCACAGGTGGCACAAAAAAGTACTTAAGACTAGAGATCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCAGTTTATGCTATTGAGGACATCAATGGAAGGCATCGAATGCTAAAATACACTCCAGAGCACATGCATTGCCTTGCTATGTTTTGGGGCCCACTTGCCCCACCTAACACTGGGATAGTTGCTGTTCAGAATTTATCGAACAATCAGGCAACATTTAGGATCACTGCAACAGCTGTTGTAGTTGAGTTTAAACATGAAGCAAAAATAGTGAAGAAAATCAAATTGGTTGGTTATCCGTGCAAGATATTCAAGAAAACAGCACTTATAAAAGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGTTGCAAAAGAAGAGTTAGGTAACCAACCAAAAAGGAAGGGTGGGCAAACCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCCCAGTTCTACAATCCATTGACAACTGCATTGCAGCCTCGTCAAAAGACTTGGCAAGGAATGAGAACTGTTGCAGAATTAAGAAGAGAAAACAATCTTACTATACCTGTAAACAAAGATTCACTCTACAAGAAAATTGAAAGAAAACAAAGGAAGTTCAATCCGGTGGTGATTCCCAAGTCTCTACAGGCAAGCCTTCCCTTTGAATCAAAACCCAAGGATATTCCCAAGCGGAAGAGGCCTTTACTTGAAGAAAGAAGGAGAAAGGGTGTTGTGATGGATCCCCGTGAGCGTAAAGTTCATGCTCTTGTTCAACAATACCAATTAATTAGAAGTGATAAGATGAAAAAGCGAAAGGTTAGTGAAGAGAAAAAGAGGAAAGCACTTGAAGCAGAGAGGGCAAAAGAGGAGGAATTGTCAAAAAAGCGCCGGAGAGAGGAAAGACGAGTGAAATATAGAGCGGACGACAAGAAGATGAAGAAAATTCGTAGAGCATAG 3552 0.4139 MAVNDADQSNKSHRTRQSGAKKDKKKLKKKKEQDSDDDQKQLNPKAFAFSSSNKAKRLQSRAVEKEQRRLHVPIIDRSYGEPAPFVIVVQGPPQVGKSLLIKSLVKHYTKQNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLVDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDQFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLINGKYVKREVHNLARFISVMKFQPISWRTSHPYVLVDRLEDATPPEKVHQNKKCDRKVILYGYLRGCNLKKGHKVHIAGVGDYSLPSITALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLMYDKDAVYININDHLVQFSKVDDENSAMTSKGKDRDVGEVLVKSLQNTKYSINEKLENSSINLFGQKPKVSPEDLADTWDDIAGKDGEDNNEVDSDGSESSDQDEADAMTKSEASGSEDEDGDASDSKTTPGDHLKEHIEFIDGRRRRGVIFGSGVNQNELTDLEEEDGAASDDVASSDSESSKAEEEEDDDNSDDDKDEDYDMGNVSKWKESLAERTLSRKTPSLMQLVYGESTVNSTSIDNGNDNSEDDENEEDFFKPVEEVKKSTRDGLNDGMVNIDDCSKCAHFVDQRWDEKDNKDIRNRFVTGNLAKASLSNPLPRPNTEEDNDDVFGDFEDLETGEKYENIQTDDAFAATIPKGDDLEAEQQRRIKKLALPEEDDVNENEVKLRRGQINESSYFDKLKEEIELRKQMNIAELDELDEAARIETEGFRTGTYLRLEIHDVPCEMVEYFDPCHPVLVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDINGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLSNNQATFRITATAVVVEFKHEAKIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKVAKEELGNQPKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRQKTWQGMRTVAELRRENNLTIPVNKDSLYKKIERKQRKFNPVVIPKSLQASLPFESKPKDIPKRKRPLLEERRRKGVVMDPRERKVHALVQQYQLIRSDKMKKRKVSEEKKRKALEAERAKEEELSKKRRREERRVKYRADDKKMKKIRRA 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0271 1183 SMART DUF663_2 711 1016 IPR007034 -
Lal1g0271 1183 Coils Coil 1130 1167 - -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 566 591 - -
Lal1g0271 1183 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 1175 IPR039761 GO:0042254
Lal1g0271 1183 PANTHER BNAC08G44910D PROTEIN 1 1175 - -
Lal1g0271 1183 SMART aarp2cn2 233 319 IPR012948 GO:0005634|GO:0042254
Lal1g0271 1183 MobiDBLite consensus disorder prediction 451 488 - -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 420 438 - -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 1129 1172 - -
Lal1g0271 1183 CDD BMS1 46 276 IPR037875 GO:0005525
Lal1g0271 1183 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 714 1017 IPR007034 -
Lal1g0271 1183 Gene3D - 85 248 IPR027417 -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 411 488 - -
Lal1g0271 1183 Coils Coil 751 771 - -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 502 603 - -
Lal1g0271 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 224 IPR027417 -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 1 64 - -
Lal1g0271 1183 Pfam AARP2CN (NUC121) domain 233 318 IPR012948 GO:0005634|GO:0042254
Lal1g0271 1183 Coils Coil 1177 1183 - -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 1129 1183 - -
Lal1g0271 1183 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 83 247 IPR030387 -
Lal1g0271 1183 MobiDBLite consensus disorder prediction 530 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0271 Lal-Chr1 1587870 1595979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0271 K14569 - gmx:100810906 1766.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0271 1 1587870 1595979 Lal9g0178 9 1103328 1111653 LSH