Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0261 ATGTGGAAGAGGATGTATTTTGAAGAAGAAGCAACTCAATTGATCAACTCTGATCTTAGGGAACTGAGTGTAGCTGCAAATAAAGTAGCCCAACATGCCATCAAACTTGGTGGCTTAGGCTCTGGAGTCTCTTTCTTTGGATTGATTGCTGCCATTGCTGCTATTTATTTGTTGATTCTGGATCGTACAAATTGGAAGACAAACATTCTTACAGCATTGCTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGATTGGAAAATGGATTGCTGCTGTTGCTGTTGTATTACGGCTTTTCTTTCCAAGACATTTCCCTAATTGGCTTGAATTGCCTGCTGCTTTGGTTATTCTTATTGTCGTCGCTCCTAGTCTACTTGCAAGCCGATTCAGAGATGACATTGTTGGGGTGATTGTATGCCTTATCATTGCATGTTATTTGCTGCAAGAACACATTCAGGCATCTGGTGGTTTCAGAAACGCATTCACTAAAGCCAATGGCTTATCGAATACCATTGGCATTGTCCTTCTGCTAGTCTATCCCATCTGGGCAGTGGTGGTCATTGTTTTTTAG 597 0.4137 MWKRMYFEEEATQLINSDLRELSVAANKVAQHAIKLGGLGSGVSFFGLIAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGEIGKWIAAVAVVLRLFFPRHFPNWLELPAALVILIVVAPSLLASRFRDDIVGVIVCLIIACYLLQEHIQASGGFRNAFTKANGLSNTIGIVLLLVYPIWAVVVIVF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0261 198 Pfam Cold acclimation protein WCOR413 8 185 IPR008892 GO:0016021
Lal1g0261 198 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 2 196 IPR008892 GO:0016021
Lal1g0261 198 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 2 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0261 Lal-Chr1 1541080 1544421 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0261 - - gmx:100811430 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0261 1 1541080 1544421 Lal1g0261 1 1541080 1544421 ECH
Lal1g0261 1 1541080 1544421 Lal2g0162 2 972774 975036 LSH