Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0233 ATGCCTTCCCGTAGAAGAACTCTTTTGAAAGTCATCATTCTCGGTGACAGCGGATATGTGAATAAGAAGTTCAGCAATCAGTATAAGGCAACAATTGGAGCTGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTGCAGATTTGGGATACAGCTGGCCAGGAGAGGTTCCAAAGCTTAGGAGTTGCTTTCTATCGTGGGGCTGACTGTTGTGTTCTTGTATATGATGTTAATTCATTGAAGTCATTTGAAAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAGGCAAGTCCTTCTGATCCCGAGAATTTTCCTTTTGTTGTTATTGGAAACAAGGTAGATATTGATGGTGGGAACAGTCGAGTGGTTTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATCCCGTATTTTGAGACATCCGCCAAGGAAGGTATTAATGTTGAAGAAGCATTCCAGTGCATAGCAAAGAATGCCCTTAAAAGTGGGGAAGAAGAAGAACTATACCTGCCAGACACAATTGATGTTGGAAGCAGCAGTCAGCAACGGGCAACTGGATGTGAGTGCTAA 594 0.4192 MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSLKSFENLNNWREEFLIQASPSDPENFPFVVIGNKVDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEELYLPDTIDVGSSSQQRATGCEC 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0233 197 SMART ran_sub_2 14 192 - -
Lal1g0233 197 PANTHER BNAA01G26470D PROTEIN 1 197 - -
Lal1g0233 197 TIGRFAM small_GTP: small GTP-binding protein domain 21 163 IPR005225 GO:0005525
Lal1g0233 197 PANTHER RAB FAMILY 1 197 - -
Lal1g0233 197 SMART rho_sub_3 11 170 IPR001806 GO:0003924|GO:0005525
Lal1g0233 197 Gene3D - 2 179 IPR027417 -
Lal1g0233 197 Pfam Ras family 19 168 IPR001806 GO:0003924|GO:0005525
Lal1g0233 197 ProSiteProfiles small GTPase Ras family profile. 1 197 IPR001806 GO:0003924|GO:0005525
Lal1g0233 197 PRINTS Transforming protein P21 ras signature 23 39 - -
Lal1g0233 197 PRINTS Transforming protein P21 ras signature 41 63 - -
Lal1g0233 197 PRINTS Transforming protein P21 ras signature 107 120 - -
Lal1g0233 197 PRINTS Transforming protein P21 ras signature 145 167 - -
Lal1g0233 197 SMART rab_sub_5 9 170 - -
Lal1g0233 197 ProSiteProfiles small GTPase Rab1 family profile. 3 197 - -
Lal1g0233 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 172 IPR027417 -
Lal1g0233 197 CDD Rab7 9 173 - -
Lal1g0233 197 SMART ras_sub_4 6 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0233 Lal-Chr1 1378489 1381735 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0233 K07897 - gmx:100305642 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0233 1 1378489 1381735 Lal1g0233 1 1378489 1381735 ECH
Lal1g0233 1 1378489 1381735 Lal2g0148 2 890634 895856 LSH