Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0231 ATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGTGACGATGATGCTGAGTATTCCCCATTTATGGGAATTGAAAAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCGCAGCTAGACGCTAGGAGATGCTCACAGGTTATCACAAAACTTTTATACCTCCTGAATCAGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAGGTGTTCTTTTCTGTGACCAAGCTTTTCCAGTCTCGTGATCTTGGGTTAAGGAGAATGGTTTACTTGATTATAAAGGAACTCTCCCCCTCTGCAGATGAGGTTATTATCGTCACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAACGCCATTCGCGTGCTATGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAGCGATACTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCTCTCGTTAGTGGCATTCATCTACTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAATTTCATGCACTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGTAAGCTGGTTACCAGCTTAACAAGGGGAACTGTCCGCTCACCTTTGGCCCAATGCCTTTTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGAAATAATACACAATCAGGGGACCGCCCCTTCTATGATTATCTCGAGAGTTGTCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCTGCGAAGGCAATTACAGAGCTCAATGGAGTAACAACCAGAGAATTAACTCCAGCAATTACTGTGCTTCAGCTCTTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGGCACACCCGATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCGGACCAAAATAGAAGCATTGCCACACTTGCTATTACTACTCTCTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATAACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCTTGAAGTTCCCATTAAAATATCGATCTCTCCTCGGCACAACAGTAAGGTTGTTGTTTAGTGTTGAAGAGGTCACAGGTTCAGATCCTCGAAATAGTCTATCTGCTTGTGGGGGGATGAACTTCTTGAGTAACATTCTCAGGGAAGAAGGTGGATTTGATTACAAGAAAGCAATCGTGGATTCAATTGTTATTCTTATTAGAGACATCCCTGATGCAAAGGAAAGTGGGTTGCTTCATCTCTGTGAATTCATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATCAGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTGCATCTTGAGAATGCAACTGTTAGGGCTAGTGCTGTGAGCACACTAGCAAAGTTTGGTGCTGCAGTTGATGGATTGAAGCCTCGCATATTTGTTCTCCTAAGGCGATGTCTTTTTGACAATGATGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGCGATGGTTCAGTTGTCGAGACTGATAAAGATGTGAAAGATTTCCTCTTTGGTTCATTTGAAATCCCACTGGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAGGCTTTTGACATTAGCTTGGTGCCCAAGGAGGTCAAGTCTCTGCCTCTTGCAGAGAAGAAAACTCAAGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCTAGTGGCCCCTCATCTACTGCAGATGCATATGAGAGGCTGCTGTTGTCCATTCCTGAGTTTACAAACTTTGGAAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTCAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACAATACCGGAACAATTATTGGAAGATGTTATTGTAATTGTGGATGCCTCAGAAGCAGAGGAATTTTCTGAGGTTTTCGCCAAGCCTCTTAGAGCTCTTCCTTATGATTCGCCTGGACAGACTTTTGTGGCTTTTGAGAAGCCCGAGGGCTTGCCAACAGCTGGGAAATTTTCTAACACACTGAAATTTATTGTTAAGGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGGTGTTGAAGATGAATACCAGCTTGAGGATCTGGAGGTTGTTGCAGCAGATTATATATTGAAAGTGGGGGTGTCAAATTTCAGGAATGCATGGGAAAGTATGGGCCCTGATTCTGAGCGAGTGGATGAATATGGTCTCGGCCCAAGGGAGAGCTTGGTTGAAGCTGTAAATACAGTCATCAACCTGCTTGGAATGCAGCCTTGTGAGGGCACCGAAGTTGTTCCACCCAATTCAAGGTCACACACATGCTTAATGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGAGGCTGTCTTTTGGACTTGACGGTCCAAAGGATGTTGCAATGAAACTGTCTGTCAGATCCGATGATGAAGCTGTCAGCGATGCCATCCATGAGATTGTGGCTAGTGGCTAG 2748 0.4356 MSQPLVKKDDDRDDDAEYSPFMGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGNNTQSGDRPFYDYLESCLRHKSEMVIFEAAKAITELNGVTTRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMAHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLLGTTVRLLFSVEEVTGSDPRNSLSACGGMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAKFGAAVDGLKPRIFVLLRRCLFDNDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGSFEIPLVNLETSLKNYEPSEEAFDISLVPKEVKSLPLAEKKTQGKKPTGLGAPPSGPSSTADAYERLLLSIPEFTNFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSEVFAKPLRALPYDSPGQTFVAFEKPEGLPTAGKFSNTLKFIVKEVDPTTGEADDDGVEDEYQLEDLEVVAADYILKVGVSNFRNAWESMGPDSERVDEYGLGPRESLVEAVNTVINLLGMQPCEGTEVVPPNSRSHTCLMSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSDDEAVSDAIHEIVASG 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0231 915 PIRSF Gamma-COP 428 913 IPR017106 -
Lal1g0231 915 PIRSF Gamma-COP 7 415 IPR017106 -
Lal1g0231 915 PANTHER COATOMER SUBUNIT GAMMA 1 405 - -
Lal1g0231 915 PANTHER COATOMER SUBUNIT GAMMA 430 915 - -
Lal1g0231 915 SUPERFAMILY Clathrin adaptor appendage domain 645 799 IPR013041 -
Lal1g0231 915 Gene3D - 23 316 IPR011989 -
Lal1g0231 915 Gene3D - 797 913 IPR012295 -
Lal1g0231 915 PANTHER COATOMER SUBUNIT GAMMA 430 915 IPR017106 -
Lal1g0231 915 PANTHER COATOMER SUBUNIT GAMMA 1 405 IPR017106 -
Lal1g0231 915 Gene3D Coatomer, gamma subunit, appendage domain 644 796 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lal1g0231 915 MobiDBLite consensus disorder prediction 625 646 - -
Lal1g0231 915 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 798 912 IPR032154 -
Lal1g0231 915 Pfam Coatomer gamma subunit appendage platform subdomain 650 795 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lal1g0231 915 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 800 912 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lal1g0231 915 Pfam Adaptin N terminal region 29 568 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lal1g0231 915 SUPERFAMILY ARM repeat 30 592 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0231 Lal-Chr1 1369915 1376250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0231 K17267 - gmx:100789362 1625.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0231 1 1369915 1376250 Lal1g0231 1 1369915 1376250 ECH
Lal1g0231 1 1369915 1376250 Lal2g0147 2 884535 890753 LSH
Lal1g0231 1 1369915 1376250 Lal9g0165 9 1025288 1031316 LSH