Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0220 ATGGGTAAAGCGAAGGGGAAGCATCGTTTGGACAAATACTATCACTTAGCGAAGGAACATGGTTACAGATCCAGAGCTTCATGGAAGCTTGTTCAACTCAATTCCAAGTTCCGCTTCCTCGAATCCGCTCACGCCGTCCTCGATCTCTGCGCCGCCCCCGGCGGTTGGATGCAGGTCGCCGTCCAACGTGTCCCCGTCGATCACCTTGTCATCGGCGTTGATCTCGCTCCAATCGCTCCTATCCGCGGCGCCGTCGCAATACAAGAAGATATCACTCGCACTGAGTGTAAGGCCAAAATTAAGAAGCTGATGAACCAGCATGGTTGCAATGCGTTCGATGTCATATTGCATGATGGTTCGCCCAATATTGGTGGTGCGTGGGCTCAGGAAGCTACGAGCCAGAACGCTCTTGTTATTGATGCTGTTAAGTTAGCTACTCAGTTCTTAGCCCCCAAGGGCATTTTCGTCACTAAGGTTTTCAGGTCGCAAGATTACAGTTCTGTAGTCTATTGTTTAAAGCAGCTGTTTGAGAAGGTTGAGGTGGATAAGCCAGCAGCTAGTCGTTCTGAATCTGCAGAAATATATGTTTTGGGCCTGAAGTACAAGGCCCCTGCAAAGATCGATCCACGACTTCTTGATTTCAAACATCTCTTTCAGGGATCAACAGAGCCCCAGTCAAAGGTTGTGGATGTACTTGGAGATAATAAACAGAAGAGACACCGTGATGGCTACGAAGATGGAAACACGACTTTAAGGAAGATGTCTTCAGCTTCAAATTTCATTTTGTCTGATTCTCCTCTGGAGATCCTTGGTTCAGTCACGTCCATAACCTTTACTGATCCAGCTGATTTACCAATCAAGGATAACGTGTTAACAACTGAAGAGGTAAAATCCCTCTGTGATGATTTGAGGGTTTTGGGTAAGCAGGACTTCAAGCATCTTCTAAAGTGGCGAATTCACATTAGAAAAGCTCTTTCTCCTACTCAAAAACCTGATCCTACTGCTAAAACTGAGACTGAAGATGAGCCTAAGGTGGATGAAGACGATAGAATACTCAATGAAATGGAGGAGCTGACAAATGCAATGGACCGCAATAAGAAGCGTGCAAAGAAGCTTCTTGCGAAAAGAAGAGCTAAGGACAAGGCTCGAAAAGCGACAGGGATGCAAATGGATGCTGTAGAAGATGGTTATGTTGATCATGAGTTGTTTTCTCTTTCCGCTATCAAGGGTAAGAAGGATCTTGCAGCTGTTGATACCACTGAATATGAAGGCGATGAGGTGCAAGTGTATGACAGTGATAATGAAAATATCCATGAAGGATCAGAGCATTCATCCAGTGGCTTGGATGATTCTGATGAAGAACGTAAAAGTTGTATTGATTTCCTGCTAACGCACCCTGGTGTTAGATATGATGAACAAATGGATGAGTTTCTTGAAGGAGCTTATGAGCGGTTTGTGGTAAAAAAGGAAGGAACTGCAAAGCAGCGGAAGCGTGTTAAGAAGTCATATGATGCAGAGAAAGAACTTTTGGAGGGTGGTGAGGATGATGGTATTGTTCAGCCCAAATATGATTCAGATGAAGATCAGGCTGTTCAAGAAGCAAATCCTTTAGTGGTGCCACTTAATGATGGTACAGGGCCCACCCAAGAGGAGATCACAAATAGGTGGTTTAGTCAGGATGTTTTTGCTGAAGCTGCAGAGGAAGGAGACTTTGAGAAACACGAGAGTGGAGATGAAATGGATATAGATGGGCACAAGGATAAGAAGTCAACAACAGCAACAACCAAGGAGAAGAAATCGATTCTGAAAAAAGCCAAAGAAAATAAAACAGAAGCTCCTGCAGCTGCGGTGATAGACAAACCCCAATCTCAAGCATCTAAGGCAAACGACGATTTTGAGATAGTTCCTGCACCTGGTACTGATTCTAGTGATGATTCATCGTCTGAATCAGAGGAGGATGATATTGAAACCAAAGCTGAGATATTGGCTTGTGCTAGGAAGATGCTGAGGAAAAAGCAACGGGAGCTGATACTTGATGATGCATATAACAAGTACATGTTTGATGATGAGGGATTGCCTAAGTGGTTTTTAGATGAGGAGAAGAGGCACCGCATACCGGTAAAGCCAGTTACGAAAGAAGAAATTGCTGCAATGAGAGCACAATTTAAAGAAATTGATGCTAGGCCTGCGAAGAAGGTGGCAGAGGCGAAAGCAAGAAAGAAACGTGTGGCGATGAGGAAGCTTGAGAAGGTGCGTAAGAAGGCGAACGCTATATCTGATCAGACAGAGATCTCTGATCGTTCGAAGAGCAAGCAAATAGAAAAACTGTATAAAAAGGCTACTACTACACAGAGGCCTAAAAAGGAATATGTGGTTGCAAAGAAAGGTGTACAAGTTAAGACTGGGAAGGGAAAAGTCCTTGTAGATCGGAGAATGAAGAAGGATGCCAGGACACGTGGAATGGGTAAGTCAGGAAAAGGGGGTCCCAAGACTAAGGGTAAGGGTGGCAAGGCTTCCAAGGGAAAAGTATCTTCAAAGGGTGGTTCAGCCAAAAAGGGAGGAAGAAAGGGGGGGAATAAATGA 2583 0.4456 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFRFLESAHAVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAVAIQEDITRTECKAKIKKLMNQHGCNAFDVILHDGSPNIGGAWAQEATSQNALVIDAVKLATQFLAPKGIFVTKVFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLKYKAPAKIDPRLLDFKHLFQGSTEPQSKVVDVLGDNKQKRHRDGYEDGNTTLRKMSSASNFILSDSPLEILGSVTSITFTDPADLPIKDNVLTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPTQKPDPTAKTETEDEPKVDEDDRILNEMEELTNAMDRNKKRAKKLLAKRRAKDKARKATGMQMDAVEDGYVDHELFSLSAIKGKKDLAAVDTTEYEGDEVQVYDSDNENIHEGSEHSSSGLDDSDEERKSCIDFLLTHPGVRYDEQMDEFLEGAYERFVVKKEGTAKQRKRVKKSYDAEKELLEGGEDDGIVQPKYDSDEDQAVQEANPLVVPLNDGTGPTQEEITNRWFSQDVFAEAAEEGDFEKHESGDEMDIDGHKDKKSTTATTKEKKSILKKAKENKTEAPAAAVIDKPQSQASKANDDFEIVPAPGTDSSDDSSSESEEDDIETKAEILACARKMLRKKQRELILDDAYNKYMFDDEGLPKWFLDEEKRHRIPVKPVTKEEIAAMRAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANAISDQTEISDRSKSKQIEKLYKKATTTQRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDARTRGMGKSGKGGPKTKGKGGKASKGKVSSKGGSAKKGGRKGGNK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0220 860 MobiDBLite consensus disorder prediction 423 452 - -
Lal1g0220 860 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Lal1g0220 860 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Lal1g0220 860 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Lal1g0220 860 Coils Coil 352 375 - -
Lal1g0220 860 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 827 - -
Lal1g0220 860 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Lal1g0220 860 MobiDBLite consensus disorder prediction 566 610 - -
Lal1g0220 860 MobiDBLite consensus disorder prediction 799 860 - -
Lal1g0220 860 MobiDBLite consensus disorder prediction 326 346 - -
Lal1g0220 860 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 827 - -
Lal1g0220 860 MobiDBLite consensus disorder prediction 804 821 - -
Lal1g0220 860 MobiDBLite consensus disorder prediction 431 452 - -
Lal1g0220 860 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 826 IPR028589 GO:0008649|GO:0031167
Lal1g0220 860 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Lal1g0220 860 MobiDBLite consensus disorder prediction 755 787 - -
Lal1g0220 860 MobiDBLite consensus disorder prediction 560 656 - -
Lal1g0220 860 Pfam Spb1 C-terminal domain 627 819 IPR012920 GO:0005634|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0220 Lal-Chr1 1299436 1305145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0220 K14857 - gmx:100790741 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0220 1 1299436 1305145 Lal2g0137 2 832537 838136 LSH