Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0196 ATGGATGCTATCAGAAAACAAGCCTCCAAGCTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTTCTGAAACAGTTTGGTGGTGGAGTATATGGAGGTTCAGATAATGTGGTTATCGATGAGGTAGAACTTCATCTATATCAGAAACTTGAGAAACTTTACACATCAACACGTGCTGCAAAGCATTATCAAAGGGATATTGTCCGTGGTGTTGAAGGTTATATTGTTACCGGGTCCAAGCAAGTTGAAATTGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGCAATACATTGTCTAGAGCTGCACTAAGTTTTGCGCAGGCACGTGCTCAAATGGAGAAGGAGCGTGGAAACTCACTAAAAGCTCTGGGTACACAGGTTGCAGAGCCCTTAAGAGCGATGGTGGTGGGAGCTCCATTGGAGGATGCTCGGCATCTAGCCCAACGTTATGACCGAATGCGACAGGAAGCTGAAGCCCTGGGTACTGAAGTTTCCAAACGTCAGGCGAAAGTAAGAGAAACACCTGGCAATGCTGATAATGCTATGAAATTAGAAGCAGCTGAAGCAAAGCTGCAAGACCTGAAGAAAAATATGGGTGTATTAGGGAAAGAAGCGGCTGCAGCATTGGCTGCTGTCGAAGCACAACAACAAAGCTTAACCCTTCAGCGCCTTATAGCTACGGTTGAAGTGGAGCGTGCCTATCATCAGGCAGTCCTCCAGATACTTGATCAGCTTGAGGGTGAGATGATGTCAGAACGACAGCGAATTGAAGCCCCTCCTACTCCTAGTGTTGATAACAGCATGCCACCACCCCCGCCATATGAAGAAGTGAATGGTGTCTATGCTTCTCAGTCACATAATGGATCAACAGATAACATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATACTCTGCTGTATCTGAAGTGGAGCTGAATCTATCAGTGGGTGATTATGTTGTCGTCCGAAAGGTTCACAATTTGGTGACAAACAAGGGATGGGCCGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTAGTTACATTGAAAGAAGGGAACGGGTTCTTGCAAGCAAGGTCGTTGAGGCGTTTTGA 1128 0.4583 MDAIRKQASKLREQVARQQQAVLKQFGGGVYGGSDNVVIDEVELHLYQKLEKLYTSTRAAKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSRAALSFAQARAQMEKERGNSLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEALGTEVSKRQAKVRETPGNADNAMKLEAAEAKLQDLKKNMGVLGKEAAAALAAVEAQQQSLTLQRLIATVEVERAYHQAVLQILDQLEGEMMSERQRIEAPPTPSVDNSMPPPPPYEEVNGVYASQSHNGSTDNMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVHNLVTNKGWAEGECKGKAGWFPFSYIERRERVLASKVVEAF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0196 375 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 365 IPR001452 GO:0005515
Lal1g0196 375 SUPERFAMILY SH3-domain 296 366 IPR036028 GO:0005515
Lal1g0196 375 Pfam Variant SH3 domain 309 361 IPR001452 GO:0005515
Lal1g0196 375 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Lal1g0196 375 SMART SH3_2 305 364 IPR001452 GO:0005515
Lal1g0196 375 Coils Coil 1 21 - -
Lal1g0196 375 Coils Coil 149 172 - -
Lal1g0196 375 PANTHER SH3 DOMAIN-CONTAINING 1 375 - -
Lal1g0196 375 Coils Coil 186 213 - -
Lal1g0196 375 Gene3D SH3 Domains 302 365 - -
Lal1g0196 375 SUPERFAMILY BAR/IMD domain-like 48 258 IPR027267 -
Lal1g0196 375 PANTHER PROTEIN, PUTATIVE-RELATED 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0196 Lal-Chr1 1167770 1171994 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0196 - - lang:109325985 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0196 1 1167770 1171994 Lal1g0196 1 1167770 1171994 ECH
Lal1g0196 1 1167770 1171994 Lal9g0138 9 888745 898241 LSH