Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0160 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCACCTGCCCCTTCATCTTCTTCTCCTCGTCCCACTACTCGTTCTACCAAACGCCCTCGTCTCTCTTCTTCCACCGCAACCGCCGCCACAACCACCACTGCAATCACAACAACTCCGTCTCGTTCGGTCAACACTCGTTCCCGCGCATCCAAGACCAAGGAACCCTTGCCGCCTAAAAACCCTCCGCTTATGGACCCCACCAATGAATCCTCCGGCTCGCGTGGTCGACGTGGCAAGAACAAGAACACCGTTGGGGACAATTCCGACAAGGGAAAAGAGAAAGAGCACGATGTGAGGATAAGGGAAGCGGAGAGGGGGAATGCTTTGAAAATGGAAAGTAGTGGCATAGGGGATGGCGATGATAACGACAGCGAGGGCGGCGTTGGCCATCAGAATCTGACGTCAGCGAGCAGTGCTCTTCAAGGGCTTCTTCGTAAACTCGGTGCTGGTTTTGATGATCTGCTTCCTTCGTCTGCCATGGGTTCTGCCTCGCATCAGAGTGCGAGGTTGAAGAAGATCCTTGCTGGATTGCGTGCTCATGGAGAAGAAGGTCGCCAGGTTGAGGCATTGACTCAGCTCTGTGAAATGCTTTCGATAGCGTCAGAGGAATCACTTAGTACTTTCTCAGTTGATTCATTTGTTCCGATACTAGTTGGGTTGTTGAATCATGAGAGCAATCCTGATATCATGCTCCTTGCTGCTAGGGCGCTGACCCATTTATGTGATGTGCTACCTTCATCGTGTGCTGCGGTCGTGCATTATGGTGCAGTGTCAATTTTCTGCGCGAGACTGCTTACAATCGAGTATATGGACTTAGCTGAACAGTCTCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACCGCCTGCTTACGAGCTGGGGCTCTTATGGCTGTGCTTTCTTATTTGGATTTCTTCTCAACTGGAGTTCAGAGGGTAGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCCTCAGATGCAGCTGATTTTGTGATGGAAGCGGTTCCTCTTTTGACAAACCTCCTTCAATACCATGATGCGAAGGTATTGGAGCATGCTTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGACAAATTGTGCAATCATGGACTAGTAACACAAGCAGCCTCCCTCATTTCTACCAGCAGCTCTGGCGGTGGACAGGCTTCTCTCAGCACATCAACATATACTGGTCTAATCCGGCTTCTTTCAATTTGCGCAAGTGGGTCTCCACTTGGAGCTAAGAGTCAGCTTCTCCTTGGAATTAGTGGCATTCTTAAAGATATCCTCTCTGGTTCTGGAGTTTCTTCCAGTGCCTCTGTTTCTCCTGCATTGAGTAGGCCACCAGATCAGATATTTGAGATTGTGAACCTGGCAAATGAGCTTCTACCTCCATTGCCAAAAGAAACAATTTCCCTTCCAGTCAGCTTGAACTTGTTTGTGAAAGGGCCCATTGTAAAAAAGTCCTCTGCTGGCAGTTCTGGGAAAGAAGAGACAAATGGAAATGTTCCTGAGATATCAGCTCGTGAGAAGCTATTAAATGATCAGCCTGAGTTACTTCAACAATTTGAGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCAAGTGTCAATGGCCCTGTTCGGCACAAATGTCTGTCTGTCATCGGAAAATTGATGTATTTCAGCACTGCAGAGATGATCCAGACTTTATCGAGTGTAACCAATATATCAAGGAAGCTTATGCATTGCTACTTTTATTCATATAGTTTCTTAGCTGGTGTCTTAGCATGGAAAGATCCACATGTTTTAGTTCCGGCTTTGCAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCAGTAAGATGTTTATCAGAGAGGGTGTTGTCCATGCGGTGGACCAGCTTATTTTGGCTGGAAGCCCAACTAGTGTCTCTACCCAAGCATCTTCTGCTGGGAAAGACAATGATTCTGTATCTGGACTATCATCTCGTTCTAGGCGTTATCGGCGACGCAGCGGTAACAACAATACTGATGGAAATCATTTGGATAATCCGAAGAATCCAGTTTCGGTAAATATTGGTTCACCACCGAGCTCTGCGGATATTTCAACAACAAATTCCAATATCCGGTCATCTGTTAGCACAGCTGCTAGAGCTTTTAAAGATAAACACTTCCCTTCTGATCCTGGGGCTATTGACGTGGGTGTTACCGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTAGTGTTGATCACCAAAGGACGAATGGGAAGGGGAAATCTAAAACTTCTGCATTTGGTCTGGAAGAGAATTCTGCGAACAAAGAAGAGTATTTAATTGTGGTGTTATCTGACATGCTGAAGGAACTTGGCAAAGGAGATGGCGTATCCACATTTGAATTTATTGGAAGTGGTGTCGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGGTATTTCTCTGAAGATCGAATATCAGAAACCAACTTGCCCAAGCTTCGCCAACAAGCACTTACAAGGTTCAAGTCATTTATAACTGTTGCACTACCTGCCAGTATTGGCGATCAGGTTATGGCTCCTATGTCTGTCCTAGTCCAGAAGCTTCAAAATGCCTTATCATCTTTGGAACGTTTCCCTGTTGTGCTGAGCCATTCAGCTAGATCATCTAGTGGAAGCACACGACTCTCCTCTGGACTAAGTGCATTATCACACCCCTTCAAGTTGCGTCTCTGTCGAGCCCAGGATGAAAAGTCACTCCGGGACTATTCATCCAATGTTGTACTGATTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAGTTTCTTTGGCCTCGTATCCAGCAAAGTGAATCGGCCCAAAAGTCAACTGTACCCGTGGGGAATTCTGAACCTGGGACAACTGCTGGAACTGGTATTTTATCTCATTCCACCTCTACTCCTTCAACTACTCGTCGTCAATCTACTAGATCCAGAGCATCTGTTAATATAGGTGATACACCTAAAAAAGAAATTACTCAAGATAAGAGCACAAACTCATCTAAGGGCAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAAGAGGTAAGAGGGCCTCAAACCAGGAATGCTGCACGTAGAAAAGCAGCTCTTGACAAAGATGCTCAAATGAAGACCGTAAATAGCGACTCTACTTCTGAGTTTTTAGCCTTTACTCCTCCCTTTGTTTTTTCCCTTCTTCATATGGTCATTAATTTGCTTGAAAAGGCATCTGAAATTTCTCTGCTGATATCTGTAGCTTTGGACACTCTAGGTTTTGTTGTTGTTAGATTGCTTGGAAAGATGACTGAAATTTCTATTCTGATATCTGTGGCTTTTGACACTCTTGATTTTGTCGTTGATGAAGATTTGGAAATATCTCCTGTTGAGATTGATGAGGCATTGATGATTGATGATGATGATGATGATATATCTGATGATGAAGATGATGATCATGAAGATATGTTGAGGGATGTTTCTCTCCCCGTTTGCTTGCCTGACAAAGTACATGATGTGAAATTGAGTGACTCTGCTGAGGATTGCGCTGTTGCTCCTGCAACAAGTGATGCCCAGACTAATGCAGCCTCAGGTTCTAGTAGCAAAGTTGTTACAACCAGGGGGTCAGACACTGCTGAGTTTAGGAATGGGTATTCTTTTAGCTCAAGGGGTGCATTGTCCTTCGCTGCTGCTGCTATGGCTGGACTTGGGTCTGTTAATAGCAGAGGTATCAGGGGTGGCAGGGATAGGCATGGGCGTCCATTGTTTGGTGCTTCTAATGATCCCCCAAAGTTGATCTTCATTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAGAGACAGTTTGTTGTAGATGAAGATGACGAGGAGAGGTTTGCTGGCAGTTCATTGGTATCTAGTGACGGAACTAGGTCGTGGGGAGATATTTATACACTAACTTATCAGAGGGCTGAGAACCAAATGGACAGGGCTTCTACTGGTGGTTCAAGCTTAATTATTTCAAAATCTGGAAAATCTGGGTCTGCATCAAATTCTAGTTCTGAGGCCAAGCTGCATCAATCTTCTGTTCTTGATAGCATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAGTCTAATCCTACATACAACATATTGGCACTATTGCGTATGCTCGAGTGTTTGAACCAGCTAGCACCCCGTTTAAGGGTCCAAGCGGTTACTGATAGCTTTGCTATGGGAAAATCTTTGGATTTAGATGAGCTAGCTGTCACCAGTGGTGCTATTGTTCCTCCAGAGGAATTCATCAGCAGCAAACTTACTCCAAAATTATCTAGGCAAATACAAGATGCCCTAGCATTATGCTGTGGGAGTCTTCCCCCATGGTGTTACCAGTTAACTAAAGCATGCCCTTTTTTGTTCCCTTTTGAGACCCGGCGACAGTACTTCTATTCTACTGCCTTCGGGTTATCTCGTGCTCTACATCGGCTGCAGCAGCAACAAGGTGCAGATGGTCATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGGAGATTACAGCGCCAGAAAGTCCGCGTTTCTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTAATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATACTTTGGTGAAGTTGGCACCGGCCTCGGTCCCACCCTTGAGTTTTATACACTTTTAAGTCACGACTTGCAAAAGGTTGGACTGCAAATATGGAGATCAGATTCTTATGAGAACTTTCAAATGGAAATTGATGGTAATAAAAAGAAAAGTAAAAGCATTGAACGCTCTTTTGCCGGAGACACAGAACTTGTTCAGTCTCGTTTTGGATTGTTTCCTCGACCTTGGCCTGCAAATTCCGATGCGTCTGAGGGTAGCCAGTTTTATAAAGTGATCGAATATTTCCGGTTGATAGGCCGTGTAGTTGCTAAAGCTCTTCAAGATGGACGCTTACTGGATTTGCCATTGTCGGTGTCATTTTATAAGCTCGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTGTTATTGATGCTGGGCTTGGTAAAACTTTGCAAGAGTTGAATGCCCTTTTTTGCCGGAAAAATTATTTAGAATCTGCTGGTAGCTATACTGATAAGATTGCTGATTTACATTTTCGTGGAGCCCCAATTGAAGATCTCTGCTTGGATTTCACACTTCCGGGTTATCCAGAATACATTTTGAAACCGGGAGATGAAATTGTTAACATCAATAATTTGGAGGAGTACATATCCATGGTGGTTGATGCAACTGTCAAGACTGGAATCATGCGTCAAATAGAAGCATTTAGAGCAGGATTCAATCAGGTTTTTGACATTTCAAGTCTACAAATTTTTACTCCCCAAGAACTGGACTATTTGCTTTGTGGTCGTAGAGAGTTGTGGAAGGTTGAGACACTAGCCGATCATTTAAAGTTTGATCATGGGTACACTGCCAAGAGCCCTGCTATAGTTAATTTACTTGAAATAATGGGAGAGTTCACACCAGAACAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCTCCTAGGTTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACAATCGTGAGGAAGCTTTCGTCAACTGCAGCTAATGTTTCATCTAATGGGAATGGACCTTCTGAATCAGCTGATGATGACTTGCCAAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTACTCTACAAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5910 0.4413 METRSRKRAEASSPAPSSSSPRPTTRSTKRPRLSSSTATAATTTTAITTTPSRSVNTRSRASKTKEPLPPKNPPLMDPTNESSGSRGRRGKNKNTVGDNSDKGKEKEHDVRIREAERGNALKMESSGIGDGDDNDSEGGVGHQNLTSASSALQGLLRKLGAGFDDLLPSSAMGSASHQSARLKKILAGLRAHGEEGRQVEALTQLCEMLSIASEESLSTFSVDSFVPILVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDKLCNHGLVTQAASLISTSSSGGGQASLSTSTYTGLIRLLSICASGSPLGAKSQLLLGISGILKDILSGSGVSSSASVSPALSRPPDQIFEIVNLANELLPPLPKETISLPVSLNLFVKGPIVKKSSAGSSGKEETNGNVPEISAREKLLNDQPELLQQFEMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQTLSSVTNISRKLMHCYFYSYSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFIREGVVHAVDQLILAGSPTSVSTQASSAGKDNDSVSGLSSRSRRYRRRSGNNNTDGNHLDNPKNPVSVNIGSPPSSADISTTNSNIRSSVSTAARAFKDKHFPSDPGAIDVGVTDDLLHLKNLCMKLNASVDHQRTNGKGKSKTSAFGLEENSANKEEYLIVVLSDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSEDRISETNLPKLRQQALTRFKSFITVALPASIGDQVMAPMSVLVQKLQNALSSLERFPVVLSHSARSSSGSTRLSSGLSALSHPFKLRLCRAQDEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQQSESAQKSTVPVGNSEPGTTAGTGILSHSTSTPSTTRRQSTRSRASVNIGDTPKKEITQDKSTNSSKGKGKAVLKPAQEEVRGPQTRNAARRKAALDKDAQMKTVNSDSTSEFLAFTPPFVFSLLHMVINLLEKASEISLLISVALDTLGFVVVRLLGKMTEISILISVAFDTLDFVVDEDLEISPVEIDEALMIDDDDDDISDDEDDDHEDMLRDVSLPVCLPDKVHDVKLSDSAEDCAVAPATSDAQTNAASGSSSKVVTTRGSDTAEFRNGYSFSSRGALSFAAAAMAGLGSVNSRGIRGGRDRHGRPLFGASNDPPKLIFIAGGKQLNRHLTIYQAIQRQFVVDEDDEERFAGSSLVSSDGTRSWGDIYTLTYQRAENQMDRASTGGSSLIISKSGKSGSASNSSSEAKLHQSSVLDSILQGELPCELEKSNPTYNILALLRMLECLNQLAPRLRVQAVTDSFAMGKSLDLDELAVTSGAIVPPEEFISSKLTPKLSRQIQDALALCCGSLPPWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQIWRSDSYENFQMEIDGNKKKSKSIERSFAGDTELVQSRFGLFPRPWPANSDASEGSQFYKVIEYFRLIGRVVAKALQDGRLLDLPLSVSFYKLVLGQELDLHDILVIDAGLGKTLQELNALFCRKNYLESAGSYTDKIADLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVNINNLEEYISMVVDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWKVETLADHLKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANVSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0160 1969 SUPERFAMILY Hect, E3 ligase catalytic domain 1541 1962 IPR035983 GO:0004842
Lal1g0160 1969 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1150 1969 IPR045322 GO:0006511|GO:0061630
Lal1g0160 1969 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 55 1083 IPR045322 GO:0006511|GO:0061630
Lal1g0160 1969 ProSiteProfiles HECT domain profile. 1670 1969 IPR000569 GO:0004842
Lal1g0160 1969 MobiDBLite consensus disorder prediction 665 729 - -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 1 144 - -
Lal1g0160 1969 SUPERFAMILY ARM repeat 181 660 IPR016024 -
Lal1g0160 1969 SMART hect_3 1560 1969 IPR000569 GO:0004842
Lal1g0160 1969 Pfam HECT-domain (ubiquitin-transferase) 1641 1969 IPR000569 GO:0004842
Lal1g0160 1969 MobiDBLite consensus disorder prediction 84 120 - -
Lal1g0160 1969 SMART arm_5 339 377 IPR000225 GO:0005515
Lal1g0160 1969 SMART arm_5 296 336 IPR000225 GO:0005515
Lal1g0160 1969 SMART arm_5 213 254 IPR000225 GO:0005515
Lal1g0160 1969 MobiDBLite consensus disorder prediction 974 1019 - -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 10 63 - -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 1056 1070 - -
Lal1g0160 1969 Gene3D Hect, E3 ligase catalytic domain 1840 1967 - -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 974 1073 - -
Lal1g0160 1969 CDD HECTc 1549 1964 IPR000569 GO:0004842
Lal1g0160 1969 Gene3D Hect, E3 ligase catalytic domains 1490 1732 - -
Lal1g0160 1969 Gene3D - 171 489 IPR011989 -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 665 683 - -
Lal1g0160 1969 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1150 1969 - -
Lal1g0160 1969 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 55 1083 - -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 1357 1382 - -
Lal1g0160 1969 MobiDBLite consensus disorder prediction 698 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0160 Lal-Chr1 1021452 1032494 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0160 K10590 - pda:103706183 2275.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0160 1 1021452 1032494 Lal1g0160 1 1021452 1032494 ECH
Lal1g0160 1 1021452 1032494 Lal2g0099 2 622895 632154 ECH
Lal1g0160 1 1021452 1032494 Lal2g0099 2 622895 632154 LSH
Lal1g0160 1 1021452 1032494 Lal9g0120 9 784730 795721 LSH