Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0149 ATGGATCTCTTCCCCCACTCTTATTTCACACTCATTGCACTCCTACTCTTCACTCCCACTGGTGTTGTAGCTGCTACATTCACATTCGTTAACAGATGCGATTACACTGTCTGGCCTGGTATTCTCGCTAATGCCGGTAGCCCACCTCTCGACTCCACCGGCTTCGAGCTCCCCAAACTAACTTCCCGCACTTTCCAACCTCCCACCGGTTGGTCCGGTCGTTTCTGGGCTCGAACCAGTTGCAACTTCGACGGATCCGGTTCCGGCTCATGTCTCACCGGTGACTGCGGTTCTGGCCAACTAGAATGCAACGGCGCCGGAGCAGCCCCTCCAGTCACCCTCGCTGAGTTCACGCTTGGCACAATAGGTCAAGACTTCTACGATGTTAGCCTCGTCGATGGTTACAATCTTCCAATGATTGTTGAAGGGAGTGGTGGATCAGGTTCATGTGCTTCCACCGGGTGCACTTCGGATCTGAACCTGCAGTGTCCAGCGGAGTTGAAAGCAGAAGGTGGTGGAGCGTGTAAAAGCGCGTGTGAAGCGTTTGGTAGCCCGGAGTATTGTTGCAGTGGCGCGTATAGTTCACCGGGAACATGTAGACCCTCAATCTACTCAGAGATGTTTAAGACTGCATGTCCAAAATCGTATAGCTACGCATACGATGATGCTACGAGTACATTTACATGCAGCGGTGCTGATTATACCATTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCATCAAGAGACCCAAACCCAATGACCCCAACAACACCACAAGGGTCAGGGATAGGAACTGAAGGAACAGGGGTATACACGGGTAATGTGGGTACGGATCCGGGTATTGGGTATTCGGGTACAGGATCTGGAGATGCCATGCTGGCAGATGGGTCATATCTAGCTGGTTTGGCAATGGGAGATTCCTATAGGACTAGTACATTTTCTTCTTCATTGTTTTACTTTTCTAGCATTTTAATTATTCTCATCTTCATTTAG 996 0.499 MDLFPHSYFTLIALLLFTPTGVVAATFTFVNRCDYTVWPGILANAGSPPLDSTGFELPKLTSRTFQPPTGWSGRFWARTSCNFDGSGSGSCLTGDCGSGQLECNGAGAAPPVTLAEFTLGTIGQDFYDVSLVDGYNLPMIVEGSGGSGSCASTGCTSDLNLQCPAELKAEGGGACKSACEAFGSPEYCCSGAYSSPGTCRPSIYSEMFKTACPKSYSYAYDDATSTFTCSGADYTITFCPSSPSQKSSRDPNPMTPTTPQGSGIGTEGTGVYTGNVGTDPGIGYSGTGSGDAMLADGSYLAGLAMGDSYRTSTFSSSLFYFSSILIILIFI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0149 331 Gene3D Thaumatin 25 240 IPR037176 -
Lal1g0149 331 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Lal1g0149 331 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 15 262 - -
Lal1g0149 331 MobiDBLite consensus disorder prediction 241 270 - -
Lal1g0149 331 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lal1g0149 331 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Lal1g0149 331 PANTHER OS03G0233200 PROTEIN 15 262 IPR001938 -
Lal1g0149 331 SMART tha2 27 240 IPR001938 -
Lal1g0149 331 CDD TLP-PA 26 239 - -
Lal1g0149 331 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lal1g0149 331 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lal1g0149 331 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lal1g0149 331 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lal1g0149 331 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Lal1g0149 331 Pfam Thaumatin family 31 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0149 Lal-Chr1 961616 963311 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0149 9 248 Receptor kinase-like Gene Family AT5G38280 48.413 3.06e-76 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0149 - - ahf:112789067 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0149 1 961616 963311 Lal1g0149 1 961616 963311 ECH
Lal1g0149 1 961616 963311 Lal23g1473 23 15068698 15070636 ECH