Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0128 ATGATTCTTCAACCACCTTCTGTGAATTTCCAATTCTCACACATTTTCCTTTCTCTTTGTCTTTGCACCAATGAAGTTAACAACTTTGTTGCATCCCCTTTGTCCAGAAAAAGAAGAAGAAAACGCTCCATTGTTCATTCCGGGTATCCAAAATTCCGAAGAAGATTGAGCCTTCGCTTCTGTGCTGTCGCCACTTGTAGTACTTCCAATGTAAATTGGAATGCGGAATTCGCAAATTCAACTAGAGGGGGTGCTGAAAGTTTCGTTTTTAAACAGGTTTCTAATGAAATTGAAGAGGATAGTGATCGTGGTGTGTCTCACTCTCAAGAGTCAAAGCAGGTTCAATCTTCAAAGTTTACCAGTTTTCAAGAAGATCCTATTGTAGATAAGTTAAGAACACAATTAGGGGTGATTCACCCAATTCCATCGCCTCCTATTAACCGAGACGTGAATGGTTTGTTTGTGTTCTTTTTCTTTGTCGGCGTTGTGTTTGATAAATTGTGGACTTCAAGGAAAAGGAACAAAGTTAGTGATGAAGATAGCTTGCGCGTTGTGTTGCCGCGGGTGCCAACAAGCTCCTCTTGGTTTTTGGAAAAGGATTTGCAGAGAAAGGAATCAGTTGAATGGGTTAACATGGTGCTCGGGAAGTTATGGAAGGTTTATAGAGGTGGAATTGAGAACTGGATTATTGGGCTTCTTCAGCCTACTATTGATGACTTGGAGAAACCTGATTATGTGCAGAGGGTCGAGGTTAAGCAATACTCGTTGGGGGATGAACCATTGTCTGTTAGGAATGTAGAACGCAAGACTTCTCGCAGTGTGAACGATTTGCAGTATCAGATAGGCCTCAGGTATACTGGTGGTGCTCGCATGCTATTAATGCTTTCTCTAAAATTTGGCATTATGCCAATTGAGGTGCCTGTTGTTGTTCACAATTTTGACATTGATTGTGAAGTTTGGGTAAAAATGCGATTAATACCAACAGAACCTTGGGTGGGATCTGCTTCATGGGCTTTTGTTTCTCTTCCAAACATCAAGTTTTTGACTAAACTTCTTACTGAAGATTTACCCAGAGAATTTGTATACCCACATAAAATTGATTTGGATTTCCAAATGGGAGAAACAGTTGGTCCTGTTGCTAACAATGTTAAATCTGGAGAGATGCAAGATGGGAAAAAAAATTCTGTTGGCGAACTATCTGTTACCGTTGTGGATGCTCGAAAGCTTCCTTATCTCTTCTATGGCAAGACAGATCCTTATGTTATTCTTAGTCTTGGAGATCAAATTATAAGCAGCAAAAAGAACAGCCAAACTACTGTCATTGGGCATCCTGGAATGCCAATTTGGAATCAAGATTTTCATATGCTTGTTGCAAACCCTAAAAAGCAGAAGTTACTTGTCCAGGTTAAGGACTCCCTTGGATTTGCAGATTTTTCTATAGGTACAGGAGAGGTTGATTTGGGATCTCTTGAAGACACTGTACCAGCTGACAGGATGGTGGTTCTACAAGGAGGTTGGGGAATTTTAAGAAAGGATTCTGCTGGGGAGGTATTACTACGGCTAACATATAAAGCATACGTGGAGGATGATGAGGATGACGAAAATGACGAGGATGCCATTGATGTTGATGCTTCAGATGATAAGTTGTCTGATTCAGAAGAAGCACATGCCACTGATAAGAAGAATGAAGGAGAGAATATGCACCTAAATAATAAGTCAATTATGGATATATTGGCAGCATTGGTTGTTAGTGAAGAATTCCAAGGAATAGTAAAATATGAAACTGGGTCTACCAAAAATTTGGATAATAGTTCAAATACAGGCTCTAAGCTATCAAAATCTCCTGTTGCCAATGATGAGTCAATTCCTTCTACTCCTAATAACTCTGAAGTCTTTTATTTTGAGGATGAATCTCAACGCAATGGGTCTGCATTGTTTTGGTTTGCTGTGGTTACTGCCATATCACTAATAATTGCACTCAACATCGGTGGTTCAAGTTACTTCAATCCTTAA 2013 0.3974 MILQPPSVNFQFSHIFLSLCLCTNEVNNFVASPLSRKRRRKRSIVHSGYPKFRRRLSLRFCAVATCSTSNVNWNAEFANSTRGGAESFVFKQVSNEIEEDSDRGVSHSQESKQVQSSKFTSFQEDPIVDKLRTQLGVIHPIPSPPINRDVNGLFVFFFFVGVVFDKLWTSRKRNKVSDEDSLRVVLPRVPTSSSWFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPTIDDLEKPDYVQRVEVKQYSLGDEPLSVRNVERKTSRSVNDLQYQIGLRYTGGARMLLMLSLKFGIMPIEVPVVVHNFDIDCEVWVKMRLIPTEPWVGSASWAFVSLPNIKFLTKLLTEDLPREFVYPHKIDLDFQMGETVGPVANNVKSGEMQDGKKNSVGELSVTVVDARKLPYLFYGKTDPYVILSLGDQIISSKKNSQTTVIGHPGMPIWNQDFHMLVANPKKQKLLVQVKDSLGFADFSIGTGEVDLGSLEDTVPADRMVVLQGGWGILRKDSAGEVLLRLTYKAYVEDDEDDENDEDAIDVDASDDKLSDSEEAHATDKKNEGENMHLNNKSIMDILAALVVSEEFQGIVKYETGSTKNLDNSSNTGSKLSKSPVANDESIPSTPNNSEVFYFEDESQRNGSALFWFAVVTAISLIIALNIGGSSYFNP 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0128 670 SMART C2_3c 398 499 IPR000008 -
Lal1g0128 670 MobiDBLite consensus disorder prediction 598 628 - -
Lal1g0128 670 Gene3D C2 domain 378 526 IPR035892 -
Lal1g0128 670 MobiDBLite consensus disorder prediction 530 566 - -
Lal1g0128 670 CDD C2 399 493 - -
Lal1g0128 670 MobiDBLite consensus disorder prediction 530 544 - -
Lal1g0128 670 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 397 525 IPR035892 -
Lal1g0128 670 MobiDBLite consensus disorder prediction 545 566 - -
Lal1g0128 670 MobiDBLite consensus disorder prediction 99 120 - -
Lal1g0128 670 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 203 371 IPR031468 GO:0008289
Lal1g0128 670 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 27 670 - -
Lal1g0128 670 Pfam C2 domain 397 496 IPR000008 -
Lal1g0128 670 ProSiteProfiles C2 domain profile. 384 500 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0128 Lal-Chr1 850833 856139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0128 - - adu:107477171 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0128 1 850833 856139 Lal2g0077 2 466313 473974 LSH
Lal1g0128 1 850833 856139 Lal9g0105 9 668610 672965 LSH