Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0123 ATGAAAAGACTAATTTTTCCTTTGTTCTCATTTCCGCCGTCACTATCTAACCGCAGATATATCATCACCGCCGCAATGGAGTGGAAGGCCGAGCGCGTGAGGAACACCTTCGTCAACTTCTTCCAAGATAAGGCTCACAAATACTACAAATCTAGTCCTGTTGTTCCTTACAATGACCCATCTCTTCTCTTCGCTAATGCTGGCATGAACCAATTCAAGCCAATCTTTTTGGGAACTGTGGATCCTAATACTGAATTAAGCAAACTCATCCGTGCTTGCAATAGCCAAAAGTGTATTCGAGCAGGTGGTAAACACAATGATCTCGATGACGTGGGAAAAGATACATACCACCACACCTTCTTTGAGATGCTGGGAAATTGGTCGTTTGGGGATTACTTCAAAAAAGAAGCTATCAGCTGGGCATGGGAACTTCTAACCAAGGTTTATAAATTACCAACAGATCGCATTTATGCCACATATTTTGGTGGTGATGACAGTTCTGGTCTTGCCCCTGATAATGAGGCTAGAGATGTTTGGCTTGAGTTTTTACCTCCTGAACGTGTGCTCCCTTTTGGCTGTAAGGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGTCCTTGCACTGAAATACATTTTGATAGAATTGGTAACCGCGATGCTGCATCATTGGTTAATAATGACGATCCTACTTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCACTTAAACCTCTACCTTCAAAGCATGTTGATACTGGGATGGGTTTTGAAAGACTGACCTCTATACTTCAGAATAAAATGAGCAATTATGACACAGATGTCTTCTTGCCTATCTTTGATGCTATTCGGCTGGCAACTGGTGCTAGGCCTTATTCTGGGAAAGTTGGAGAAGAGGATGAAGATAAAGTTGACATGGCATACAGGGTTATTGCAGATCACATCAGAACTCTGTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAATGAGGGCCGTGAGTATGTTCTGAGGCGCATACTACGTCGAGCTGTTCGTTATGGACGTGAAGTGCTAAAAGCTGAAGAGGGCTTTTTCAATGGGCTTGTCAGTGTTGTGGTTAACCTCATGCATGGTATTTTCCCTGAGCTAAAAGATCGGGAAGAACACATTGTGAAAGTAATTAAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTACTTAAGGGGATTGATAGATTTAAGAAATTTAAGACGGCTGCTCAAGATGCTAAGCGAAAGACACTGAGTGGGGAGGCAAGTTGCTGCTTAGTGACCAAGAGGCCACATATTCAAATCTTGGAAACAACCTCCCCGCCTGTTGGGGAAGCATTTCTCTTGTGGGATACATATGGGTTCCCATTAGATCTTACTCAGTTGATGGCAGAAGAGGCACAATTGCTTGTTGATGTTGAAGGTTTTAATAGTGCCATGGAAGCTGCAAGGGAGAGATCAAGAAATGCTCAAGCAAAGGAAGCTGGTGGTGTTATTGTTATGGATGCTGATGCCACTTCAGCATTACACAGAAGGGGCATTGCTCCAACAGATGATAGTTTCAAATATACTTGGGAGGACCATGAAAGTGTGGTAAAAGCAATATATTCTGGTTCTGAGTTTGTTGATTCTGTTAATACTGATGGGGACATTGGTATAGTTCTGGAATCTTCAAGCTTCTATGCTGAACAAGGTGGTCAGATTTTTGATACCGGATCACTTAAGAGTCCACATACGTTGTTTGGAGTCCATAATGTGCAAGTTTATGGGGGTTATGTTCTACACATTGGTTCTAATGGAACTGGCATCTCTGTTGGTGACAAAGTTGTTTGTCAGGTTGATTATGAAAGGCGCAAACTTATAGCTCCTAACCATACCTGCACACATATATTAAATTTTGCTCTTAGGAAAGAGCTTGGCGATCATGTTGACCAAAAAGGATCTATTGTTCTTCCTGAAAAACTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTAAAACATTGAAGAAAATTGAGGATATTGTTAATGACCAAATCATTGCTAAATTGGATGTGAGTGCGAAGGAGGCATCTCTTGCTGAAGCCAAGCGTGTTAATGGTTTACGAGCTGTTTTTGGAGAAGTCTATCCTGATCCAGTTAGAATCGTGTCAATTGGACAAAAAGTAGAGGATCTCGTCGCTGACCCTGATAACGAGAAATGGTTATCTTTTTCAGCAGAATTATGCGGTGGTACCCATGTATTAAACACAGGAGAAGCTAAAGCGTTTGCACTTTTATCCGAGGAAGGAATTGCAAAAGGAATCCGCAGAATAACTGCTGTCACGGCTGATCGTGCTTATGATGCAAAGAAGGCGGCAGATGAGTTTGAACAGCAAGTGGATGATGCGGATAAGTTAGAAGGAAGTTTGCTTGAAGAGAAAGTTTCATATCTGAACCGCACCGTGGAAACACTATCAATTTCTGCAGCCAAGAAATCTGGCATCAAGGATAAGATAGCCAAACTTCAGGCTAAAGTGAGAATAGCACAAAAGCAGCTAGCTGAAGCAAACAAACGTGAAGCTGTAAGGATCACAATTGAGAAGGCTGAACTTGCAGCTTCAGAGCAGATACCTTTTTGCATATCTCATGTGAATGTTGGTCTGGATGTAGCTGCAGTTCGTGAAGCTGTTACAAAAGTCATTGGGCAGAAGGGGCTATCTGTAATGGTTTTTAGTACTGATGAATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTACCAGAGAAAGGAGTTGAAGGGAAGCTTGATGTGTCAGAGTGGCTGAGTAATGCTTTGGGGCCTCTTAAAGGGAAATGTGGTAAAGGAAAAGGTGGTCTTGCTACCGGACAGGGTACAGAAGCATCACAAGTGAATGAGGCCATGGAGCTTGCAGCTTCATTTGCAACAATGAAGTTGAATTAA 2982 0.4252 MKRLIFPLFSFPPSLSNRRYIITAAMEWKAERVRNTFVNFFQDKAHKYYKSSPVVPYNDPSLLFANAGMNQFKPIFLGTVDPNTELSKLIRACNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAISWAWELLTKVYKLPTDRIYATYFGGDDSSGLAPDNEARDVWLEFLPPERVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPSKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIRLATGARPYSGKVGEEDEDKVDMAYRVIADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAEEGFFNGLVSVVVNLMHGIFPELKDREEHIVKVIKEEEESFGRTLLKGIDRFKKFKTAAQDAKRKTLSGEASCCLVTKRPHIQILETTSPPVGEAFLLWDTYGFPLDLTQLMAEEAQLLVDVEGFNSAMEAARERSRNAQAKEAGGVIVMDADATSALHRRGIAPTDDSFKYTWEDHESVVKAIYSGSEFVDSVNTDGDIGIVLESSSFYAEQGGQIFDTGSLKSPHTLFGVHNVQVYGGYVLHIGSNGTGISVGDKVVCQVDYERRKLIAPNHTCTHILNFALRKELGDHVDQKGSIVLPEKLRFDFSHGKPVDAKTLKKIEDIVNDQIIAKLDVSAKEASLAEAKRVNGLRAVFGEVYPDPVRIVSIGQKVEDLVADPDNEKWLSFSAELCGGTHVLNTGEAKAFALLSEEGIAKGIRRITAVTADRAYDAKKAADEFEQQVDDADKLEGSLLEEKVSYLNRTVETLSISAAKKSGIKDKIAKLQAKVRIAQKQLAEANKREAVRITIEKAELAASEQIPFCISHVNVGLDVAAVREAVTKVIGQKGLSVMVFSTDESTNKAVVCAGVPEKGVEGKLDVSEWLSNALGPLKGKCGKGKGGLATGQGTEASQVNEAMELAASFATMKLN 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0123 993 CDD AlaRS_core 30 276 - -
Lal1g0123 993 Gene3D Bira Bifunctional Protein; Domain 2 28 277 IPR045864 -
Lal1g0123 993 Gene3D - 881 988 - -
Lal1g0123 993 SUPERFAMILY ThrRS/AlaRS common domain 625 801 IPR018163 GO:0000166
Lal1g0123 993 TIGRFAM alaS: alanine--tRNA ligase 33 434 IPR002318 GO:0000166|GO:0005737
Lal1g0123 993 Gene3D - 523 625 - -
Lal1g0123 993 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 28 799 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lal1g0123 993 Gene3D - 626 802 - -
Lal1g0123 993 Coils Coil 485 505 - -
Lal1g0123 993 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 281 508 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Lal1g0123 993 Pfam DHHA1 domain 847 986 IPR003156 GO:0003676
Lal1g0123 993 Coils Coil 839 866 - -
Lal1g0123 993 SMART tRNA_SAD_4 727 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lal1g0123 993 SUPERFAMILY Class II aaRS and biotin synthetases 29 280 IPR045864 -
Lal1g0123 993 PRINTS Alanyl-tRNA synthetase signature 106 117 IPR002318 GO:0000166|GO:0005737
Lal1g0123 993 PRINTS Alanyl-tRNA synthetase signature 234 245 IPR002318 GO:0000166|GO:0005737
Lal1g0123 993 PRINTS Alanyl-tRNA synthetase signature 261 274 IPR002318 GO:0000166|GO:0005737
Lal1g0123 993 PRINTS Alanyl-tRNA synthetase signature 318 334 IPR002318 GO:0000166|GO:0005737
Lal1g0123 993 PRINTS Alanyl-tRNA synthetase signature 342 355 IPR002318 GO:0000166|GO:0005737
Lal1g0123 993 PANTHER ALANYL-TRNA SYNTHETASE 25 993 - -
Lal1g0123 993 Hamap Alanine--tRNA ligase [alaS]. 28 992 IPR023033 GO:0004813
Lal1g0123 993 SUPERFAMILY Translation proteins 552 625 IPR009000 -
Lal1g0123 993 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 727 785 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lal1g0123 993 Pfam tRNA synthetases class II (A) 456 629 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lal1g0123 993 Pfam tRNA synthetases class II (A) 33 435 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lal1g0123 993 PANTHER BNACNNG61840D PROTEIN 25 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0123 Lal-Chr1 812265 823980 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0123 K01872 - gmx:100788271 1534.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0123 1 812265 823980 Lal2g0075 2 446067 457378 LSH