Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0089 ATGTTTTTGGCTAAACCCATTTTCCGAAAACACCTAATACCCTCTTCCACCCTTTCACTATTCCATCATACATTTAGTTCTTCTTCTGCAGCTGCAATTCAAGCTCAGAAGACTATCCATGAAGGACCCAGAAATGATTGGACTCGTGATGAAGTCAAATCAATTTACGATTCTCCCATTCTCGATCTTCTCTTTCATGGGGCTCAAGTTCATAGACATGCTCATAACTTCAGAGAAGTGCAGCAGTGTACTCTGATGTCAATTAAAACCGGAGGGTGCAGTGAAGATTGTTCATATTGTCCTCAATCCTCAAGGTATGATACTGGTCTCAAAGCTCAACGACTTTCCAACAAGGACGCTGTTCTCCAGGCTGCAAAAAAGGCAAAAGAGGCTGGGAGCACTCGCTTTTGTATGGGTGCTGCGTGGAGGGACACAGTAGGAAGAAAGACCAACTTCAACCAGATCCTTGATTATGTAAAAGAAATAAGGGGTATGGGGATGGAGGTGTGTTGCACCCTTGGCATGCTGGAGAAACAGCAGGCTGTTGACCTAAAGAATGCAGGTCTCACGGCCTACAATCACAATCTTGACACTTCAAGGGAATACTATCCAAACATCATCACGACAAGGACTTATGATGAGCGCCTACAAACCCTTGAGTTCGTTCGTGATGCAGGGATTAATGTTTGTTCTGGAGGAATTATAGGGCTTGGAGAAGCAGAGGATGACCGAGTAGGTTTGTTACACACTCTGTCAACCCTCCCCACCCATCCAGAGAGTGTTCCTATTAATGCACTTATCGCTGTAAAGGGAACCCCTCTAGAGGACCAAAAGCCTGTTGAAATATGGGAGATGATTCGCATGATAGCCACAGCGCGTATCATAATGCCAAAAGCAATGGTGAGGTTATCAGCAGGTAGAGTTCGTTTCTCAATGCCTGAGCAGGCATTGTGCTTTCTTGCAGGCGCAAATTCTATCTTCACTGGTGAAAAGCTTCTCACTACTGCTAACAATGATTTTGATGCTGATCAACTCATGTTTAAAGTTCTTGGTCTGCTCCCAAAAGCTCCAAGCTTTAATGAAGATCAAACTAGTGAGGCAGAGGATTTTAAGGAAGCTGCTTCTTCTAGTTGA 1134 0.4427 MFLAKPIFRKHLIPSSTLSLFHHTFSSSSAAAIQAQKTIHEGPRNDWTRDEVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLMSIKTGGCSEDCSYCPQSSRYDTGLKAQRLSNKDAVLQAAKKAKEAGSTRFCMGAAWRDTVGRKTNFNQILDYVKEIRGMGMEVCCTLGMLEKQQAVDLKNAGLTAYNHNLDTSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEDDRVGLLHTLSTLPTHPESVPINALIAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTANNDFDADQLMFKVLGLLPKAPSFNEDQTSEAEDFKEAASSS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0089 377 PANTHER BIOTIN SYNTHASE 26 372 IPR002684 GO:0004076|GO:0009102
Lal1g0089 377 CDD Radical_SAM 90 290 - -
Lal1g0089 377 Hamap Biotin synthase [bioB]. 45 355 IPR002684 GO:0004076|GO:0009102
Lal1g0089 377 Pfam Biotin and Thiamin Synthesis associated domain 262 352 IPR010722 -
Lal1g0089 377 ProSiteProfiles Radical SAM core domain profile. 78 307 IPR007197 GO:0003824|GO:0051536
Lal1g0089 377 Pfam Radical SAM superfamily 90 248 IPR007197 GO:0003824|GO:0051536
Lal1g0089 377 PIRSF Biotin_synth 27 361 IPR024177 -
Lal1g0089 377 SMART BATS_2 262 354 IPR010722 -
Lal1g0089 377 SFLD Radical SAM 40 360 IPR007197 GO:0003824|GO:0051536
Lal1g0089 377 SFLD biotin synthase 40 360 IPR024177 -
Lal1g0089 377 SUPERFAMILY Radical SAM enzymes 45 354 - -
Lal1g0089 377 Gene3D Aldolase class I 44 356 IPR013785 -
Lal1g0089 377 SMART MiaB 83 291 IPR006638 GO:0003824|GO:0051536
Lal1g0089 377 TIGRFAM bioB: biotin synthase 55 352 IPR002684 GO:0004076|GO:0009102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0089 Lal-Chr1 617070 620957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0089 K01012 - gmx:732577 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0089 1 617070 620957 Lal2g0049 2 282737 289875 LSH