Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1442 ATGAGGTGGGAAAAGGTAGAGGTGAAGATAAATGGTGAAGATGGAAAAGGACCAGGGAAAAGGTGGGGCCACACATGTAATACCATTAAAGGTGGAAGCTTTATCTATGTCTTTGGAGGTTATGGCGAACATAATTCTCAAACCAACAAAGTTTACGTCTTTCATACTCTGAACCAGAGTTGGAGCCAACCTGAGATAAAAGGGTACCCACCTATTCCTAGGGATAGCCATACATGCACAACCATTGGTGATAATCTATTTGTGTTTGGTGGTACAGATGGGGTTAATCCGCTTAATGATTTGCATATACTGGATACTTCTTCACATACATGGATTTCTCCAACCGTAAGAGGAGAAGGGCCAGAGGCTCGTGAGGGTCATAGTGCAGCAGTTGTTGGTAAACGGCTATTTATCTTTGGTGGCTGTGGAAAATCTGCAGATAATAATAGCGAGGTCTACTATAATGATCTTTACATATTGAATACAGAGACATTTGTTTGGAAACGTGCTACAACATCAGGCACTCTGCCATCTCCTCGTGATAGCCATAGTTGCTCTTCTTGGAAAAACAAAATTATTGTGATAGGGGGTGAAGACGGACATGATTATTATTTATCTGATGTCCATATCCTTGATACTGATACACTAATTTGGAGGGAGCTGACTACATCAGGCCAATTATTGCCACCTCGAGCTGGCCATTCTACAGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAGAATTTATATAATGACCTTTACATGCTTGATATTGATACTGGTGTTTGGACGAATGTTACAACTACAACCAACAGTCCTTCTGCTAGATTTTCTGTAGCCGGTGACTGTGTAGACCCTATTAAGAGTGGTGTTCTTGTATTCATCGGTGGTTGTAATAAAAGTCTTGAGGGCCTTGATGACATGTTTTACCTATATACAGGGATGGCCAGAGAAAGTGGACAGAGGCCAGAGAAGTTATCTTTGAGGAAGCAGCTGAAGCTGAAATGCCAAGAGCAGAATCTTAATCCTGCCCAAAATGAAGTTCTGGTTAGATATGGAGTGGGAACTGATATTAGACCGCTTATTACAGTGTTGAACTATAGCCAGCCAAGTGGACTAAATGTCCCAGTAAACCAACCCCTGCCTCCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTGACCAAAAACATCTCCGAGGGATATGCGATTGAAACTGTTATCGACGGAAAGCCTCTTCGAGGTATTCTGTTTCTTAACAAGCCGAGCTCTCTGCACCCATCTGATCTTACTTCCACTAGGAAAAGGGCTGCTGGTGAAGTTGCTAGTATCATCACAAATGGTGCACACACCAACAGGTCAAAAACTCCTAAAGTGTCTGAAATAAAAAATAGACATGCAGTTCATGGAGACAGTTCAGAATCTCATGAACACCACCACACTGAAGCTGTGGCTGCTCTTCTGTCATGTAACCCAACAACTGTTCATGCTTCCATCATTCATAAGATGTCTGCCAACCGAGAACCAGAAGCTGCTTCTTCGAATCAAATTGATGGTGAAAAATATGAAGCACCAAAATCCTCCAGTGGAAACTTGAAAAATGATGGAGCAAATGATGTGGCAAGTTCCGCAAGTGAAGTCCCAGCCAATGATCAGACAAATGTGCCAATTTCGAACTCTGAAGTTCCAAGGCATGACAATAAAAATGATGCACCAAAGTGCAACACTGGATTTTTTAAACCTGCCACAACTGAGAGTGCTGCGTGTCTGTCAAATCAAGATGAATTGATAGATGTGATGATGGATTGCACAGCTCCAAGGACAGAAGAAAGCAGTGAACCAGCAAAATTGACTTGA 1872 0.4209 MRWEKVEVKINGEDGKGPGKRWGHTCNTIKGGSFIYVFGGYGEHNSQTNKVYVFHTLNQSWSQPEIKGYPPIPRDSHTCTTIGDNLFVFGGTDGVNPLNDLHILDTSSHTWISPTVRGEGPEAREGHSAAVVGKRLFIFGGCGKSADNNSEVYYNDLYILNTETFVWKRATTSGTLPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELTTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTTTNSPSARFSVAGDCVDPIKSGVLVFIGGCNKSLEGLDDMFYLYTGMARESGQRPEKLSLRKQLKLKCQEQNLNPAQNEVLVRYGVGTDIRPLITVLNYSQPSGLNVPVNQPLPPPGKKMFEAKVTKNISEGYAIETVIDGKPLRGILFLNKPSSLHPSDLTSTRKRAAGEVASIITNGAHTNRSKTPKVSEIKNRHAVHGDSSESHEHHHTEAVAALLSCNPTTVHASIIHKMSANREPEAASSNQIDGEKYEAPKSSSGNLKNDGANDVASSASEVPANDQTNVPISNSEVPRHDNKNDAPKCNTGFFKPATTESAACLSNQDELIDVMMDCTAPRTEESSEPAKLT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1442 623 SUPERFAMILY Kelch motif 118 312 IPR015915 GO:0005515
Lal19g1442 623 MobiDBLite consensus disorder prediction 509 576 - -
Lal19g1442 623 MobiDBLite consensus disorder prediction 461 486 - -
Lal19g1442 623 Pfam Kelch motif 121 165 - -
Lal19g1442 623 SUPERFAMILY Kelch motif 15 169 IPR015915 GO:0005515
Lal19g1442 623 MobiDBLite consensus disorder prediction 532 567 - -
Lal19g1442 623 Pfam Kelch motif 21 66 - -
Lal19g1442 623 SMART kelc_smart 34 84 IPR006652 GO:0005515
Lal19g1442 623 SMART kelc_smart 191 241 IPR006652 GO:0005515
Lal19g1442 623 SMART kelc_smart 242 288 IPR006652 GO:0005515
Lal19g1442 623 SMART kelc_smart 85 134 IPR006652 GO:0005515
Lal19g1442 623 Gene3D - 151 365 IPR015915 GO:0005515
Lal19g1442 623 Gene3D - 1 62 IPR015915 GO:0005515
Lal19g1442 623 Gene3D - 63 150 IPR015915 GO:0005515
Lal19g1442 623 MobiDBLite consensus disorder prediction 451 486 - -
Lal19g1442 623 Pfam Galactose oxidase, central domain 179 224 - -
Lal19g1442 623 Pfam Galactose oxidase, central domain 230 280 - -
Lal19g1442 623 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 444 - -
Lal19g1442 623 Pfam Kelch motif 73 111 IPR006652 GO:0005515
Lal19g1442 623 PANTHER KELCH REPEAT DOMAIN 1 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1442 Lal-Chr19 17044120 17050333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1442 111 317 Acyl Lipid Metabolism Gene Families AT3G05420 31.797 3.63e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1442 - - gmx:100820222 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1442 19 17044120 17050333 Lal19g1442 19 17044120 17050333 ECH
Lal7g1346 7 18655067 18662210 Lal19g1442 19 17044120 17050333 LSH