Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1296 CCTCTGAAATCTTATCCTTCATCAAATATGGTTAAGTGCAGTAACAGCTTAATCGGAATACTCAATTTCGTAACCCTTGTTCTCTCCATTCCAATTATTGTGGCCGGCGTTTGGTTGAGCAAACAATCGAACACCGAATGCGAACGGTGGTTAGAGAAACCCGTCATCGCCCTCGGCGTGTTCTTATTAATAATTTCAATATTGGGTCTCGTCGGCGCGTGTTGTCGTGTGACATGGCTTCTATGGGTTTACTTATTGGTAATGTTCGTGCTCATCGTTATTCTGTTTGGGTTCACAATATTCGCTTTTGTTGTGACCAATAAAGGTGCTGGTGAAGCGGTTTCTGGTAAGGGGTATAAGGAGTATAGGCTTGGTGATTATTCGAATTGGTTGCAGAATAGAGTTAATGGAAGCACTTGGGAGAGGATTAAGAGTTGTTTACAGTCTGGTAAACTCTGCTCCAAATTTGAAAACCAATTTATCAACGATAACGTTGATAAGTTCTACACCGAGAATTTGTCCTCTCTTCAGTCTGGATGCTGTAAGCCTTCAAACGACTGTGGTTTCATCTATAAGAGTCCAACTAGCTGGACGAAAACAGGAAATGTTACTCATACCAACCCTGATTGTGATTCTTGGAATAATGATCCAAACATTCTGTGTTACAATTGCCAATCTTGCAAGGCTGGTTTACTGCAAAACATTAAGAGTGATTGGAAGAAGGTTGCTGTTGTCAACATCATATTCCTAGTCTTCCTCATTATTGTCTACTCCATTGGTTGCTGTGCATTCAGGAATAACAGGATGGACAATTATTATAAGGGATATTAG 831 0.4055 PLKSYPSSNMVKCSNSLIGILNFVTLVLSIPIIVAGVWLSKQSNTECERWLEKPVIALGVFLLIISILGLVGACCRVTWLLWVYLLVMFVLIVILFGFTIFAFVVTNKGAGEAVSGKGYKEYRLGDYSNWLQNRVNGSTWERIKSCLQSGKLCSKFENQFINDNVDKFYTENLSSLQSGCCKPSNDCGFIYKSPTSWTKTGNVTHTNPDCDSWNNDPNILCYNCQSCKAGLLQNIKSDWKKVAVVNIIFLVFLIIVYSIGCCAFRNNRMDNYYKGY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1296 276 ProSitePatterns Transmembrane 4 family signature. 59 81 IPR018503 GO:0016021
Lal19g1296 276 PRINTS Transmembrane four family signature 16 39 - -
Lal19g1296 276 PRINTS Transmembrane four family signature 48 74 - -
Lal19g1296 276 PRINTS Transmembrane four family signature 75 103 - -
Lal19g1296 276 Pfam Tetraspanin family 16 263 IPR018499 GO:0016021
Lal19g1296 276 PANTHER TETRASPANIN-8 10 275 - -
Lal19g1296 276 PANTHER TETRASPANIN-8-RELATED 10 275 IPR044991 GO:0009734|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1296 Lal-Chr19 16044117 16049321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1296 10 273 Miscellaneous Gene Families AT2G23810 66.415 5.44e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1296 - - gmx:100819507 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1296 19 16044117 16049321 Lal19g1296 19 16044117 16049321 ECH
Lal7g1154 7 17395044 17397301 Lal19g1296 19 16044117 16049321 LSH
Lal14g1873 14 18203715 18207071 Lal19g1296 19 16044117 16049321 LSH