Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1125 ATGATGATCGATTTTGATTCAACCACTCGCAGAATCGATGTTGATAATCGCATTCCCCTTCGCTATTATTATCGAATTGCCGATAATCTCCTCAAACAGGCAAGCATCTATCGCGAGGAGAAAAACATAGTTGACTTGTATATCATACTCATTAGATATTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTACCAAGTATCACTTCCCAAGGGAAGAGCAGCACATAAAAAGAGATCACTAGCTATTTTGGATGAGGTAGAATCTTTGAAGCCCGAGTTTAAACGCCGGTGGGAAAAATTGAATGGCTCACGTGTAAAAGCTTCATTCCCTGAAGTTAATGACTTCAATAAGGCTTTGGAGAGTTCAGTGAATTCATCTTTGGAACGGCCTTCTGTAAATAAAAGCTCTATCTCGAGCATGGATTTTAAACAGCCTGCCGGATTGGGTTCACACCCTTCATGGAAATATAACAATAATATGTTAACTTCAAATTCCATGCCCATTGACAAGCAGTTTCAGAAACTATCTGTTGGTCTACCTCCTCCAAAGAAGGAGACTTTGTCCAGGCACTCATTTTTGGGGCCAAATGGTCTTCAGGGCCAATGGCTTGGACCTAGTACGGAAATAAAGGTTCAATATCCAAGCAGTAATGATCTGACACATGACAAGGATTCAAGCCTGAATCAGGCTGGGCAATATGAACTTGTGGCAGTTAAAGATGGTGATCAAGGACCAGTTACTTCCACATTGGAGTCAATTCTCTCCTTGGATGATGGTCGATGGTTGCGTCCTGCTGTCGAGTCCTGCTCTCCTGTTTTAACTGAATTAAGGGAGGACCCTTTCCAGCTCAACATCAAGCAACCTCTGCCTCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATGCCCCTATTCCTCCTTCAAAAGTTGCAGATCCACGGCCAGGACCAGCTAAATCTTCTCAGGATTCTGGAGTTGGTCCCACTACATATCAACACCTACATATTCCTATCAAAATGATGGAAGATTTTTTGAGACTGGCTTCAGGAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAACAGGGTTTTCCATATCACTACACTTATAATCCCAAAGCAGGAATCAACGTCAGACTCGTGCCAAACATTGAACGAAGAAGAAATATTTGAAGTACAAGACAGTTTATCACTTTTTACTTTAGGTTGGATACATACACACCCGTCACAGACTTGTTTCATGTCATCTGTAGATCTGCACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAGCAAGTCCGCATGGCATATTTCATCTCTCTGATCCAGGTGGTGTGTCTGTCATTCGTAACTGTCAACAACGTGGATTTCATCCTCATGAAGAGCCTTCGGATGGAAGTCAAATATATGAGCATTGTTCTCATGTCTATATGAATGCTAACTTGAAGTTTGATGTTGTTGACCTAAGAGAGAGATGA 1539 0.4204 MMIDFDSTTRRIDVDNRIPLRYYYRIADNLLKQASIYREEKNIVDLYIILIRYLSLVSETIPYHRDYQVSLPKGRAAHKKRSLAILDEVESLKPEFKRRWEKLNGSRVKASFPEVNDFNKALESSVNSSLERPSVNKSSISSMDFKQPAGLGSHPSWKYNNNMLTSNSMPIDKQFQKLSVGLPPPKKETLSRHSFLGPNGLQGQWLGPSTEIKVQYPSSNDLTHDKDSSLNQAGQYELVAVKDGDQGPVTSTLESILSLDDGRWLRPAVESCSPVLTELREDPFQLNIKQPLPPPVLAQVYPEHAPIPPSKVADPRPGPAKSSQDSGVGPTTYQHLHIPIKMMEDFLRLASGNTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFTLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTASPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSQIYEHCSHVYMNANLKFDVVDLRER 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1125 512 SUPERFAMILY JAB1/MPN domain 335 466 - -
Lal19g1125 512 Gene3D - 4 123 - -
Lal19g1125 512 SMART pad1_6 331 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal19g1125 512 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 510 - -
Lal19g1125 512 Pfam USP8 dimerisation domain 8 102 IPR015063 -
Lal19g1125 512 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Lal19g1125 512 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal19g1125 512 MobiDBLite consensus disorder prediction 299 330 - -
Lal19g1125 512 MobiDBLite consensus disorder prediction 299 315 - -
Lal19g1125 512 CDD MPN_AMSH_like 333 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lal19g1125 512 Gene3D Cytidine Deaminase, domain 2 320 512 - -
Lal19g1125 512 PANTHER AMSH-LIKE PROTEASE 3 510 - -
Lal19g1125 512 SUPERFAMILY USP8 N-terminal domain-like 17 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1125 Lal-Chr19 14827540 14834927 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1125 K11866 - gmx:100812784 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1125 19 14827540 14834927 Lal19g1125 19 14827540 14834927 ECH
Lal14g1572 14 16309673 16318375 Lal19g1125 19 14827540 14834927 LSH