Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1100 ATGTCATCATCTCATCAGAAGAACATAAAGCAAAAGGTCTTCACGTGCCTTACCAAGCTCTCTGACCGTGATACTCACTCCCTCGCCCTCGCCGAACTCGAATCTATCGCCCGGAATCTCGAACCAACCACTGTGCCGGTGTTTCTCTCTTGCATTCTTTCCACCGATTCCTCCGATAAATCCCTAGTTCGTAAGCAATGCGTGAACCTCTTAGGGCTTCTGTCTGAAACTCACGGCAACGTGCTCTCTCCCTACCTCTCTAAAATCCTCGCCGCCGTCATACGCCGCCTCCGCGACCCGGACTCGTCGGTTCGATCCGCATGTGTTAACTCCGTTTCGGCATTGTCGCGCCATGTCACCAAGCAACCGTTCTCCACTTTTCTGAAACCGTTAACAGAGGCTATGTTCACGGAGCAGGATCAGAACTCGCAGATTGGAACCGCGCTTTGTTTAGCTTCGGCGATTGATGGAGCTCCGGATCCTGACCCGGTTAGGTTGGCGAAGATGTTGCTGAGGTTCGAGAAATTGCTGAAGCGAGATACGTTTAAGGCGAAGCCGGCGGTGATGACGCTAATCAGAAGCGTCGTTGAGGCAGGTGGCGCGTCGAATCACGCAATTCTGAGGAGTTTGGTTCCTTGCTTGGTGGAATCGTTGAGAAGCGGCGATTGGACGGCGAGGAAGGCTGCCGCGGAGGCCTTGGTGGTGATTGGGAACGTGGAGAGGGACTACTTGTCGGAATTGAAGGCCGAATGTTTAACAGTTTTCGAGAATCAACGATTTGATAAGGTAAAGGTTGTTCGGGAAGTTATGAATCAGATGGTGGAAGCGTGGAAGCAGATTCCTGATGTATCGGATGAATTTTCGCCACCTCCTCAGTCACAATCTTCTTCAAAAGAGAATGCAAGTGATGGGCGCTATCCCCCAGGCCGTCAAAATTCATGTAACCCTTGTTCAGCAATGGCAAATTTTCAGAAGAAATCCTCTCCTGTTAGTAGATTCAGTCTACCAGACAGTTCATCTGCTAGCAATGCTAAAAATGCAAGTGCTTTAAGTAGTAACAAGAGAATGAGTTTGGGTGTTTCACGAAAATTAAATCATAAGAATTGGAATGTTCAAGTTGCTGTGCCAAATGCTCCCTCTGCAGCCATGGCAGGTCGTGGCAATCTTCAGGAGGTGGATCAAACTGATTTGGAAAGAAGCAAAAAAGAGAAAAGCAGATTTTTAAAGCCAGAAATGAGACGTGCTCTATTCAATAAAACTTCTGATGACAAAATACAGAAGTTTGGTGGGTCCAAAGTTGTATCTCGTGTGGTTCCATATCATGAAGAGAGTCAAGACTCATTTCCTGTCAGAAATGTCACTAAAGATCTTGTAAAAAATGACAAAGATGGTGAAGAATTATCTTTGATCCATAACCAGTTACAACAAATTGAGAGGCAGCAGTCGAGTCTACTTGATCTTCTGCAGAATTTTATGGGAAGCTCACAAAGTGGAATGCGTTCTTTGGAGACTCGTGTACGTGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAATTATGATGCTCCTGGTAATGCATGTTGCTTGCTACCTGGAGCAGAATTTTTGAGCTCCAGATTCTGGAGGAAAACACAGGGTCGATATTCATCCTCCCGGTTTTCTAAATCTGGTGGCACCCCATCACTTTCTGCCATGCATTATAAAGCTGACAGGAATGCTGAAACTAGGTTGCCAAACCAGGGACTCAGGCTTGATGGAGGCTTCATCACTAATCCACTGGCAGAGGCTCGCACCAATTCAAGGGATTTTGTAAGATCAGAGCCAGTTTAA 1860 0.4656 MSSSHQKNIKQKVFTCLTKLSDRDTHSLALAELESIARNLEPTTVPVFLSCILSTDSSDKSLVRKQCVNLLGLLSETHGNVLSPYLSKILAAVIRRLRDPDSSVRSACVNSVSALSRHVTKQPFSTFLKPLTEAMFTEQDQNSQIGTALCLASAIDGAPDPDPVRLAKMLLRFEKLLKRDTFKAKPAVMTLIRSVVEAGGASNHAILRSLVPCLVESLRSGDWTARKAAAEALVVIGNVERDYLSELKAECLTVFENQRFDKVKVVREVMNQMVEAWKQIPDVSDEFSPPPQSQSSSKENASDGRYPPGRQNSCNPCSAMANFQKKSSPVSRFSLPDSSSASNAKNASALSSNKRMSLGVSRKLNHKNWNVQVAVPNAPSAAMAGRGNLQEVDQTDLERSKKEKSRFLKPEMRRALFNKTSDDKIQKFGGSKVVSRVVPYHEESQDSFPVRNVTKDLVKNDKDGEELSLIHNQLQQIERQQSSLLDLLQNFMGSSQSGMRSLETRVRGLELALDEISYDLAISSGRMTNYDAPGNACCLLPGAEFLSSRFWRKTQGRYSSSRFSKSGGTPSLSAMHYKADRNAETRLPNQGLRLDGGFITNPLAEARTNSRDFVRSEPV 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1100 619 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 5 613 IPR033337 GO:0005874|GO:0008017
Lal19g1100 619 SUPERFAMILY ARM repeat 7 274 IPR016024 -
Lal19g1100 619 MobiDBLite consensus disorder prediction 281 355 - -
Lal19g1100 619 ProSiteProfiles HEAT repeat profile. 89 127 IPR021133 -
Lal19g1100 619 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 5 613 - -
Lal19g1100 619 Gene3D - 1 384 IPR011989 -
Lal19g1100 619 Pfam HEAT repeat associated with sister chromatid cohesion 84 110 IPR026003 -
Lal19g1100 619 MobiDBLite consensus disorder prediction 286 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1100 Lal-Chr19 14648719 14653468 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1100 - - gmx:100789197 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1100 19 14648719 14653468 Lal7g0940 7 15761266 15765238 ECH
Lal19g1100 19 14648719 14653468 Lal19g1100 19 14648719 14653468 ECH
Lal7g0940 7 15761266 15765238 Lal19g1100 19 14648719 14653468 LSH