Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1095 ATGGAATTCCACAGATTCAATAGCAGTAGTGGCTCTTCATCTGACTCTAACCACCATCTTCAACCATCTTCACTTTCTTCACAACGCAGCATGGCATCAATTCCTTCACTTAACTCAATTCATCATCACCCTTCCACTGCCACTCACAACCTTCTCACAACTCTCACACCCCACACTTCCTACACTTCCTCTCTAACCCTTTCTGCACAGTTTCTCTACACAGGTTCATCTGATTCAGAAATCAAATCATGGAACCGAACCCCTTTGGGATTCACCAACTATAACATGGTTGTTTCTGCTGGAAAGGGTGCTATTAAGTCCCTAGTAGTTCACTCCAACAAACTTTTCAGTGCTCACCAAGACCATAAAATCCGTGTTTGGAAAATTAGTAATAACCAAAACCATCAACAAAAGCACACCCTTTTAGCAACGCTTCCAGCATTTAGTGACCGTATCTCAAAGGGTTTAATCCCAAAGAACCATGTTAAGATTAGAAGGCACAAAAAATGTACATGGGTTCACCATGTTGACACAGTTTCTGCCTTGGCCTTATCCAAAGATGGAACCTTGCTCTATTCGGTTTCATGGGACCGGACAATGAAGATTTGGAGAACAAAAGATTTCACGTGTTTGGAATCATTAATCAATGCACATGATGATGCAATAAACGCGGTCGCAGTTTCAGATGATGGACATGTATACACTGGATCAGCAGATAAGAGAATCAAGGTTTGGAAGAAAAATCAAGATGAAAAAACACACACCCTTTTGGAATCATTAGAGAAACATAACTCTGGGATTAATGCATTAGCTCTTAGCAATAGTAATGGTACGAATTTATTGTTATATTCTGGTGCATGTGATAGATCAATATTGGTCTGGGAGAAGGAACATGATGGTAAAATGGTAGTGGTGGGTGCACTTAGGGGGCACACTAAATCAATTTTGTGTTTGGCAGTGGTGGTGGATTTAATATGCAGTGGTTCTGAGGATAAAACTATTCGAATTTGGAGAGGTATTGATCATAAAGAGTATTATTGTTTAGCTGTTTTAGAAGGGCATAGAGGTCCTATTAAGAGCCTAACTATGGTTGAATATCATTGTGACCCTTCTGAAGAAGCCTCTTTCATTGTCTATAGTAGCAGTTTGGATTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTCTTATCTAA 1194 0.397 MEFHRFNSSSGSSSDSNHHLQPSSLSSQRSMASIPSLNSIHHHPSTATHNLLTTLTPHTSYTSSLTLSAQFLYTGSSDSEIKSWNRTPLGFTNYNMVVSAGKGAIKSLVVHSNKLFSAHQDHKIRVWKISNNQNHQQKHTLLATLPAFSDRISKGLIPKNHVKIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRTMKIWRTKDFTCLESLINAHDDAINAVAVSDDGHVYTGSADKRIKVWKKNQDEKTHTLLESLEKHNSGINALALSNSNGTNLLLYSGACDRSILVWEKEHDGKMVVVGALRGHTKSILCLAVVVDLICSGSEDKTIRIWRGIDHKEYYCLAVLEGHRGPIKSLTMVEYHCDPSEEASFIVYSSSLDCDIKVWQIFVPLI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1095 397 MobiDBLite consensus disorder prediction 1 40 - -
Lal19g1095 397 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 395 IPR045182 -
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 255 IPR001680 GO:0005515
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Lal19g1095 397 Pfam WD domain, G-beta repeat 210 246 IPR001680 GO:0005515
Lal19g1095 397 Pfam WD domain, G-beta repeat 306 337 IPR001680 GO:0005515
Lal19g1095 397 Pfam WD domain, G-beta repeat 173 203 IPR001680 GO:0005515
Lal19g1095 397 Pfam WD domain, G-beta repeat 347 390 IPR001680 GO:0005515
Lal19g1095 397 Pfam WD domain, G-beta repeat 257 294 IPR001680 GO:0005515
Lal19g1095 397 CDD WD40 51 391 - -
Lal19g1095 397 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Lal19g1095 397 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Lal19g1095 397 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 203 - -
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 246 - -
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 337 - -
Lal19g1095 397 SMART WD40_4 253 295 IPR001680 GO:0005515
Lal19g1095 397 SMART WD40_4 301 338 IPR001680 GO:0005515
Lal19g1095 397 SMART WD40_4 91 128 IPR001680 GO:0005515
Lal19g1095 397 SMART WD40_4 207 246 IPR001680 GO:0005515
Lal19g1095 397 SMART WD40_4 165 204 IPR001680 GO:0005515
Lal19g1095 397 SMART WD40_4 48 85 IPR001680 GO:0005515
Lal19g1095 397 SMART WD40_4 344 391 IPR001680 GO:0005515
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 337 IPR001680 GO:0005515
Lal19g1095 397 Gene3D - 160 251 IPR015943 GO:0005515
Lal19g1095 397 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 9 395 - -
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 85 IPR001680 GO:0005515
Lal19g1095 397 Gene3D - 252 394 IPR015943 GO:0005515
Lal19g1095 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 295 IPR001680 GO:0005515
Lal19g1095 397 SUPERFAMILY WD40 repeat-like 47 392 IPR036322 GO:0005515
Lal19g1095 397 Gene3D - 42 155 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1095 Lal-Chr19 14617823 14619016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1095 215 391 Acyl Lipid Metabolism Gene Families AT3G18860 26.111 5.72e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1095 - - gmx:100777242 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1095 19 14617823 14619016 Lal19g1095 19 14617823 14619016 ECH
Lal19g1095 19 14617823 14619016 Lal17g0947 17 7610593 7611822 PCT
Lal17g0947 17 7610593 7611822 Lal19g1095 19 14617823 14619016 PCT