Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0947 ATGGAATACCAAAGCTCTTACAATGGTGGCTCTTCCTCATCTCACACTAACAACCTTCAACCAATGTTATCACTAAGTTCACAACGCAGTCTTGCTTCATTTCCTTCCCTTAATAATAACTCTCAATCTCATGATCCTCACCATCATTGCCTCACAACTCTCAAAGGCCACAATTCCTACATATCATCTCTTACCCTTTCGGACAAAATCCTCTTCACCGGTTCATCTGATCGCGAAATCAAATCCTGGAATCCAATCTCTTATGACTCTGAATTAGACCTTGAGAACAAAAACCGAGGTTCTATCTCTTCGACCATTAATACAGTGCTTGCTGGAAAGGGTGCTGTAAAGTCCCTAGTATTTCAATCTGATAAGCTTTTCAGTGCTCACCAAGACCATAAAATCAGGGTTTGGAAAATTAACAGCGTCAACGATGAACCTGAACACCAGAAGTACACGCGTATAGCCACACTCCCAACGCTTGGTGACCGTGCTTTGAAGATGTTGATCCCAAAGAACCATGTTCAAATTCGCAGGCACAAAAAACGCACATGGGTTCATCATGTTGACACAGTTTCTGCTCTAGCCTTGTCCAAAGATGGTGGCACCTTGCTGTACTCAGTTTCGTGGGACAAGACAATTAAAATATGGCGAACTAGTGATTTCTCATGCTTGGAATCAGTGAACAACGCACACGACGATGCCATAAACGCTATTGTAGTTTCCTACGATGGGCGTGTTTATACTGGATCAGCAGATAACACCATCAAAGTTTGGGAAAAATGCTATGGAGAAAAGAAACACTCCTTGATAGATACCTTAGAAAAACATAACTCTGGGATCAATGCATTAGCACTAAGCAGTGATGAGTCTCTATTGTATTCTGGAGCATGTGACAGGTCAATATTGGTTTGGGAGAAAGGGGAAAATGAAAGGAAAATGGTGGTGGTTGGTGCTCTTAAGGGGCACAAAAAATCTATATTATGCTTATATGTTGTGTCTGATTTGGTGTGTAGTGGTTCTGCGGATAAAACAATTAGAATTTGGAGAGGTTTAGGTAGAGAATATTCTTGTTTAGTTGTATTAGAAGGGCATATGGGTCCAATTAAATGCTTAACTGGTGTTGTTGATCATAGTAACTCATCTGAGTCTGAAGCTTCTTTTCTAGTCTATAGTGGTAGTTTGGACTGTGATATTAGGGTGTGGCAGATTTTTGTTCCTGTTGTCTAA 1230 0.4073 MEYQSSYNGGSSSSHTNNLQPMLSLSSQRSLASFPSLNNNSQSHDPHHHCLTTLKGHNSYISSLTLSDKILFTGSSDREIKSWNPISYDSELDLENKNRGSISSTINTVLAGKGAVKSLVFQSDKLFSAHQDHKIRVWKINSVNDEPEHQKYTRIATLPTLGDRALKMLIPKNHVQIRRHKKRTWVHHVDTVSALALSKDGGTLLYSVSWDKTIKIWRTSDFSCLESVNNAHDDAINAIVVSYDGRVYTGSADNTIKVWEKCYGEKKHSLIDTLEKHNSGINALALSSDESLLYSGACDRSILVWEKGENERKMVVVGALKGHKKSILCLYVVSDLVCSGSADKTIRIWRGLGREYSCLVVLEGHMGPIKCLTGVVDHSNSSESEASFLVYSGSLDCDIRVWQIFVPVV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0947 409 SUPERFAMILY WD40 repeat-like 47 404 IPR036322 GO:0005515
Lal17g0947 409 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 407 IPR045182 -
Lal17g0947 409 Gene3D - 175 267 IPR015943 GO:0005515
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 260 - -
Lal17g0947 409 MobiDBLite consensus disorder prediction 1 20 - -
Lal17g0947 409 Gene3D - 37 174 IPR015943 GO:0005515
Lal17g0947 409 Pfam WD domain, G-beta repeat 357 402 IPR001680 GO:0005515
Lal17g0947 409 Pfam WD domain, G-beta repeat 318 349 IPR001680 GO:0005515
Lal17g0947 409 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Lal17g0947 409 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Lal17g0947 409 Pfam WD domain, G-beta repeat 230 259 IPR001680 GO:0005515
Lal17g0947 409 Pfam WD domain, G-beta repeat 183 217 IPR001680 GO:0005515
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 227 IPR001680 GO:0005515
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 84 - -
Lal17g0947 409 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 11 407 - -
Lal17g0947 409 Gene3D - 268 406 IPR015943 GO:0005515
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 313 350 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 221 260 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 267 306 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 102 139 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 355 403 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 178 218 IPR001680 GO:0005515
Lal17g0947 409 SMART WD40_4 47 84 IPR001680 GO:0005515
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 84 IPR001680 GO:0005515
Lal17g0947 409 CDD WD40 50 403 - -
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 349 - -
Lal17g0947 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 349 IPR001680 GO:0005515
Lal17g0947 409 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Lal17g0947 409 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Lal17g0947 409 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0947 Lal-Chr17 7610593 7611822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0947 244 404 Acyl Lipid Metabolism Gene Families AT3G18860 25.926 3.50e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0947 - - gmx:100777242 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0947 17 7610593 7611822 Lal17g0947 17 7610593 7611822 ECH
Lal19g1095 19 14617823 14619016 Lal17g0947 17 7610593 7611822 PCT
Lal17g0947 17 7610593 7611822 Lal19g1095 19 14617823 14619016 PCT