Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1088 ATGGCATCAAATGCTTCAAAGTTCATCAAGTGTGTCACCGTTGGTGACGGAGCTGTAGGCAAAACCTGCATGCTAATTTGCTACACAAACAACAAATTCCCTACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTTAATTTAGGCCTCTGGGACACTGCTGGACAAGAGGATTACAACAGGCTTAGACCTTTGAGCTATAGGGGTGCTGATGTCTTTGTCTTGGCCTTCTCTTTAGTTAGTGGTGCAAGCTATGAGAATGTGTTGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCTCCTGGCGTCCCGGTGGTACTAGTTGGAACCAAATTGGTTCTGTGTGGTATTTTTTATGACCGTATAGATCTTCGACAAGACAAGTACTATTTAGCGGATCACCCTGGTCTGGTGCCTGTGACTTCAGAGCAAGGCGAGGAGCTGCGGAAACTGATAGGAGCTGCATATTATATTGAGTGTAGCTCAAAAACTCAGCAGAATGTCAAGTCGGTTTTTGATGCTGCCATCAGGGTGGTCATCAAGCCCACGCCAAAGCAGCAAGAGAAGAAGAAGAAGAAGAAACAACAACATCGAGGGTGTCTTTTAAATGTCATGTGTGGAAGGAATATTGTTAGTCATAAATGA 675 0.4415 MASNASKFIKCVTVGDGAVGKTCMLICYTNNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSGASYENVLKKWIPELQHFAPGVPVVLVGTKLVLCGIFYDRIDLRQDKYYLADHPGLVPVTSEQGEELRKLIGAAYYIECSSKTQQNVKSVFDAAIRVVIKPTPKQQEKKKKKKQQHRGCLLNVMCGRNIVSHK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1088 224 SMART ras_sub_4 6 192 - -
Lal19g1088 224 PRINTS Transforming protein P21 ras signature 9 30 - -
Lal19g1088 224 PRINTS Transforming protein P21 ras signature 32 48 - -
Lal19g1088 224 PRINTS Transforming protein P21 ras signature 49 71 - -
Lal19g1088 224 PRINTS Transforming protein P21 ras signature 111 124 - -
Lal19g1088 224 PRINTS Transforming protein P21 ras signature 167 189 - -
Lal19g1088 224 PANTHER RHO FAMILY GTPASE 1 215 IPR003578 GO:0005525|GO:0007264
Lal19g1088 224 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED 1 215 - -
Lal19g1088 224 SMART rho_sub_3 11 192 IPR001806 GO:0003924|GO:0005525
Lal19g1088 224 ProSiteProfiles small GTPase Rho family profile. 2 189 - -
Lal19g1088 224 Pfam Ras family 10 190 IPR001806 GO:0003924|GO:0005525
Lal19g1088 224 TIGRFAM small_GTP: small GTP-binding protein domain 7 183 IPR005225 GO:0005525
Lal19g1088 224 CDD Rop_like 8 190 - -
Lal19g1088 224 ProSiteProfiles small GTPase Ras family profile. 4 215 IPR001806 GO:0003924|GO:0005525
Lal19g1088 224 SMART rab_sub_5 9 192 - -
Lal19g1088 224 Gene3D - 2 213 IPR027417 -
Lal19g1088 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 189 IPR027417 -
Lal19g1088 224 ProSiteProfiles small GTPase Rab1 family profile. 4 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1088 Lal-Chr19 14555689 14560006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1088 5 193 EF-hand Containing Proteins AT5G27540 22.751 5.13e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1088 K04392 - gmx:100806681 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1088 19 14555689 14560006 Lal19g1088 19 14555689 14560006 ECH
Lal14g1531 14 16073146 16077384 Lal19g1088 19 14555689 14560006 LSH
Lal7g0932 7 15714268 15718107 Lal19g1088 19 14555689 14560006 LSH