Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1086 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACGGTGGAGACGATCAATGATGGGCTCAGCGAATTCAATGTGGAATTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTTTGGAAAGTTCGTGTTGAGCTTCCTGATGCTTATCCATACAAATCCCCCTCTATCGGCTTTGTGAACAAAATATTCCACCCAAATGTTGATGAGTTATCCGGCTCTGTGTGCTTGGATGTCATTAACCAATCATGGAGCCCAATGTTTGATCTTCTAAATGTATTTGAAGTTTTTCTTCCACAACTGTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCGTCATTAATGATGAAGGATAAAAAGTTGTATGACCAAAAAGTTAAAGAGTACTGTGAGAGGTATGCTAAGAAGGAAAACATTGCCAACTCTACAGCTGATGAGGATAGTGATGAGGAAGACATGAGTGAAGAGGAAAGTGGATCAAGTGATGATGACATTGCTGGCCATGCTGATCCTTAA 555 0.4 MSSPSKRREMDVMKLMMSDYTVETINDGLSEFNVEFHGPKESLYEGGVWKVRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENIANSTADEDSDEEDMSEEESGSSDDDIAGHADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1086 184 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Lal19g1086 184 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Lal19g1086 184 SMART ubc_7 4 148 - -
Lal19g1086 184 SUPERFAMILY UBC-like 4 150 IPR016135 -
Lal19g1086 184 CDD UBCc 7 143 IPR000608 -
Lal19g1086 184 MobiDBLite consensus disorder prediction 151 184 - -
Lal19g1086 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Lal19g1086 184 MobiDBLite consensus disorder prediction 157 173 - -
Lal19g1086 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lal19g1086 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Lal19g1086 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1086 Lal-Chr19 14544310 14550582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1086 3 117 Miscellaneous Gene Families AT3G17000 23.577 1.36e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1086 K10576 - gmx:100790685 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1086 19 14544310 14550582 Lal19g1086 19 14544310 14550582 ECH
Lal15g1401 15 16173409 16176032 Lal19g1086 19 14544310 14550582 LSH