Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1401 ATGTCTTCTCCAAGTAAACGCCGAGACATGGATTTGATGAAGCTGATGATGAGTGATTACAAGGTTGAGATGATCGATGATGGAATGCAAGAATTCTTTGTTGAATTTCATGGCCCAAAAGACAGCCCTTATGAAGATGGTGTGTGGAAGATAAGAGTGGAGTTACCTGATGGTTATCCTTATAAGTCTCCGTCTATTGGTTTTGTAAACAAAATTTACCACCCTAATGTTGATGAAGTGTCTGGATCAGTTTGCTTGGATGTTATTAACCAAACCTGGAGTCCCATGTTTGACCTTGTTAATGTGTTCGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCGAACGCATCAGATCCATTAAATGATGATGCTGCTGCTTTGATGATGCAAGATTCTGCTGCATATGAACAAAGAGTTAAAGAATATTGTCAAAAATATGCGAAGGCGGAAGATGTTGGAGCTACACAGGAGGAGGAAAGTTCTAGTGAGGAAGAAGAGCTGAGTGAAGAAGATTACTCCTCTAGTGATGATGATGATGATGATGATGATGCCATTGCTGGCCAACCTGATCCTTAG 576 0.4062 MSSPSKRRDMDLMKLMMSDYKVEMIDDGMQEFFVEFHGPKDSPYEDGVWKIRVELPDGYPYKSPSIGFVNKIYHPNVDEVSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNDDAAALMMQDSAAYEQRVKEYCQKYAKAEDVGATQEEESSSEEEELSEEDYSSSDDDDDDDDAIAGQPDP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1401 191 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lal15g1401 191 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Lal15g1401 191 CDD UBCc 10 143 IPR000608 -
Lal15g1401 191 Gene3D Ubiquitin Conjugating Enzyme 1 171 IPR016135 -
Lal15g1401 191 MobiDBLite consensus disorder prediction 156 191 - -
Lal15g1401 191 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lal15g1401 191 SMART ubc_7 4 148 - -
Lal15g1401 191 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 191 - -
Lal15g1401 191 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 3 191 - -
Lal15g1401 191 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lal15g1401 191 MobiDBLite consensus disorder prediction 149 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1401 Lal-Chr15 16173409 16176032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1401 3 117 Miscellaneous Gene Families AT3G17000 23.577 6.82e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1401 K10576 - gmx:100791133 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1401 15 16173409 16176032 Lal15g1401 15 16173409 16176032 ECH
Lal15g1401 15 16173409 16176032 Lal19g1086 19 14544310 14550582 LSH