Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1082 ATGGCTCTAAATTTGTCTTCTCCTTCTGATGTAAAGTCTCTTTTTTTCACTGATTCCTTCAACTCCAACACTCTCATCACTGCTAAATTCCCAGGTAGTTTTGCTTTGAAAAGAAAAGATCGTGGATCAACGGTTGGAGGACGAGTTTATTGCTCCGCGCAAGCACCACCACCAGCCTGGCCAGGACGAGCTGTACCAGAAGCAAGTCGCAAGACTTGGGAGGGGCCAAAACCCATCTCCATTGTCGGGTCTACAGGCTCAATTGGAACTCAGACACTAGATATTGTGGCTGAGAATCCAGATAAGTTTAAAGTTGTAGCACTTGCAGCTGGTTCAAACATTACTCTTCTTGCAGATCAGATAAAGAGATTTAAGCCTCAACTTGTTTCTGTTAAAAATGAGTCTTTAGTTGCGGAACTTGAAGAGGCTTTAAATGGTGTTGAACAAAAACCTGAGATCATCCCTGGAGAGCAGGGAATCATTGAGGTTGCTCGTCACCCAGACGCAGTTACCGTTGTCACAGGAATAGTAGGCTGTGCAGGACTCAAGCCAACAGTTGCTGCGATAGAAGCCGGGAAAGACATAGCTTTGGCTAACAAAGAGACACTGATTGCTGGAGGTCCTTTTGTTCTTCCGCTTGCTAAGAAGCATAACATAAAGATACTGCCTGCTGATTCAGAGCATTCTGCCATTTTTCAGGGGTTGCCAGAGGGTGCACTCAGGAAAATTATTTTAACTGCATCTGGAGGTTCTTTCAGGGATTGGCCTGTAGAAAAACTAAAAGATGTTAAAGTTGCTGATGCATTAAAGCATCCCAACTGGAGTATGGGAAAAAAGATAACCGTGGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATGACATTGACATTGTCATTCATGCTCAATCAATCATACATTCAATGATCGAAACACAGGACTCATCTGTTCTGGCACAATTGGGGTGGCCTGATATGCGGTTGCCAATCCTCTATACATTATCATGGCCTGACAGAGTTCAATGTTCTGAAGTAACTTGGCCTCGCCTTGATCTTTGCAAGCTTGGTTCACTAACATTTAAAGCTCCTGACAATGTTAAGTATCCATCCATGAATCTTGCCTACGCTGCTGGCCGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTGGAATTGTTTATTGATGAAAAGATTACCTATTTGAACATTTTCAAGGTTGTGGAGCTAACATGCGAGAAGCATCAAAATGAGTTGGTAACATCGCCTTCCCTTGAGGAAATTGTTCACTATGACCAGTGGGCACGAAAATTTGCTGCTAGTCTGCAGAGCTCGTCGGTTTTGACCCCTGTTCCAGCATGA 1413 0.4381 MALNLSSPSDVKSLFFTDSFNSNTLITAKFPGSFALKRKDRGSTVGGRVYCSAQAPPPAWPGRAVPEASRKTWEGPKPISIVGSTGSIGTQTLDIVAENPDKFKVVALAAGSNITLLADQIKRFKPQLVSVKNESLVAELEEALNGVEQKPEIIPGEQGIIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHNIKILPADSEHSAIFQGLPEGALRKIILTASGGSFRDWPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGADYDDIDIVIHAQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRVQCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMNLAYAAGRAGGTMTGVLSAANEKAVELFIDEKITYLNIFKVVELTCEKHQNELVTSPSLEEIVHYDQWARKFAASLQSSSVLTPVPA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1082 470 Gene3D - 378 463 - -
Lal19g1082 470 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 221 301 IPR013644 GO:0005515
Lal19g1082 470 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 464 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lal19g1082 470 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 1 464 - -
Lal19g1082 470 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 201 336 - -
Lal19g1082 470 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 77 456 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lal19g1082 470 Gene3D - 70 225 - -
Lal19g1082 470 PIRSF Dxp_reductoisomrs 76 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lal19g1082 470 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 79 207 IPR013512 GO:0070402
Lal19g1082 470 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 76 225 IPR036291 -
Lal19g1082 470 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 79 459 IPR003821 GO:0008299|GO:0030604|GO:0046872
Lal19g1082 470 Pfam DXP reductoisomerase C-terminal domain 333 454 IPR026877 -
Lal19g1082 470 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 366 460 IPR036169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1082 Lal-Chr19 14513192 14517541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1082 K00099 - gmx:100790607 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1520 14 16015783 16020732 Lal19g1082 19 14513192 14517541 LSH