Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1045 ATGGATCGAAACCCTAGCACCTTCAACCACCACTGTGTTGCCTCTTTCAGAACCTTAACACCTCACATCACGTGCCTCGTCGTAAACAACAACCTCCTCTACGCCGCATCTGTGAACCTCATCAACGTCTTCGACCTCTCTCACTACACTCACGTCGACGTATTCAACGACAAAAACCCTTCCTCAGGCTTTGTCAAATCCATTGCCTTCAACAACGACGGTTCTAGAATCTTCACCGCTCACCAAGACTGCAAGATTCGTGTCTGGCTCGTCACCCCCTCAAAACGACACCGTCTTCTGTCTTCGCTCCCTACCGTTAAAGACAAATTACGCCGCTGCTTGGTTCCCAGAAACTACGTCAGCGTGAGACGTCATCGAAAGAAGCTTTGGATACAACACTGTGACACGGTTTCTGGTTTGGTTGTGAACGATAGGGTTATGTACTCTATTTCATGGGATAAGAGTTTTAAGGTTTGGGATTTAGAACGTTACCGGTGTTTGGAGTCCGTTAAGGCGCATGAAGACGCTATCAACGATATTGCTGTGTCAAATAACGGCACCGTTTACACGGCGTCAGCGGATGGGTACATTAAGGTTTGGGATAAAGATAATAAGCTGAAAAAACACACGTTGGTTAGAACTATAGGGAAAATGAAATCTAATGTTAATGCAATTGCACTGGATAAAGATGAGACAACATTGTTTTCAGGTGGTTGTGACGGAACAATATGCCGTTGGAAGAGGAAGAAAAACGACGTCGTTAAGGTGGAGAAGTTGAAGGGTCATGGTGGGGCCATACTATGTATGATAAGCGTGAAGGGTTTATTGGCGAGTGGGTCAACAGATCAGACGGTGAGGATATGGGAACGTGAAAATGGGAGTAGCGATAGGTATTGTTGCAAGGTAGTATTGGAAGGGCATGAGAAACCTGTTAAGTCATTGGTGGCTTTTACTGCTGATGCTGAGAAAGGTCACTCAAACTGTGTTGTTAGGCTCTTTAGTGGAAGTCTTGATGGGGATATTAATGTATGGGAGTTGTTTCCTTTTGATTGA 1053 0.4511 MDRNPSTFNHHCVASFRTLTPHITCLVVNNNLLYAASVNLINVFDLSHYTHVDVFNDKNPSSGFVKSIAFNNDGSRIFTAHQDCKIRVWLVTPSKRHRLLSSLPTVKDKLRRCLVPRNYVSVRRHRKKLWIQHCDTVSGLVVNDRVMYSISWDKSFKVWDLERYRCLESVKAHEDAINDIAVSNNGTVYTASADGYIKVWDKDNKLKKHTLVRTIGKMKSNVNAIALDKDETTLFSGGCDGTICRWKRKKNDVVKVEKLKGHGGAILCMISVKGLLASGSTDQTVRIWERENGSSDRYCCKVVLEGHEKPVKSLVAFTADAEKGHSNCVVRLFSGSLDGDINVWELFPFD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1045 350 Pfam WD domain, G-beta repeat 165 201 IPR001680 GO:0005515
Lal19g1045 350 Pfam WD domain, G-beta repeat 258 288 IPR001680 GO:0005515
Lal19g1045 350 Pfam WD domain, G-beta repeat 62 89 IPR001680 GO:0005515
Lal19g1045 350 Pfam WD domain, G-beta repeat 216 246 IPR001680 GO:0005515
Lal19g1045 350 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 9 346 - -
Lal19g1045 350 SMART WD40_4 252 289 IPR001680 GO:0005515
Lal19g1045 350 SMART WD40_4 163 201 IPR001680 GO:0005515
Lal19g1045 350 SMART WD40_4 9 45 IPR001680 GO:0005515
Lal19g1045 350 SMART WD40_4 124 160 IPR001680 GO:0005515
Lal19g1045 350 SMART WD40_4 297 345 IPR001680 GO:0005515
Lal19g1045 350 SMART WD40_4 208 247 IPR001680 GO:0005515
Lal19g1045 350 SMART WD40_4 48 90 IPR001680 GO:0005515
Lal19g1045 350 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Lal19g1045 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 298 IPR001680 GO:0005515
Lal19g1045 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 201 - -
Lal19g1045 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 89 IPR001680 GO:0005515
Lal19g1045 350 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Lal19g1045 350 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Lal19g1045 350 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Lal19g1045 350 Gene3D - 119 348 IPR015943 GO:0005515
Lal19g1045 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 201 IPR001680 GO:0005515
Lal19g1045 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Lal19g1045 350 SUPERFAMILY WD40 repeat-like 9 347 IPR036322 GO:0005515
Lal19g1045 350 CDD WD40 17 345 - -
Lal19g1045 350 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 346 IPR045182 -
Lal19g1045 350 Gene3D - 4 118 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1045 Lal-Chr19 14248776 14249828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1045 123 350 Miscellaneous Gene Families AT5G08390 22.222 9.43e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1045 - - aprc:113874855 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1045 19 14248776 14249828 Lal19g1045 19 14248776 14249828 ECH
Lal15g1374 15 15866868 15872117 Lal19g1045 19 14248776 14249828 LSH