Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1374 ATGGTTTTGTCAAATAACGAAACAATATTGGTGACTGGTGGTGCTGGTTTTATTGGTACTCACACGGTTGTTCAGCTTCTTGAAGATGGTTTTAATGTTTCAATAATTGATAATCTCCATAACTCTGATATTGAAGCTGTTAACCGTGTCAGGGAAGTTGTTGGTCCTAACCTTTCTAACAATCTACAATTTACCCAGGGTGATCTTAGAAATAAAGATGACTTGGATAAATTATTCTCCAAAACAAAGTTTGATGCAGTTATCCACTTCGCTGGATTAAAAGCAGTTGGAGAAAGTGTTACAAATCCACGTCGCTATTTTGATTTTAATTTGGTTGGCACCATTAATCTCTATCAAGTTATGGCAAAGTATAACTGTAAAAAGATGGTTTTCTCATCATCTGCAACAGTTTATGGGCAACCTGAAAGAATACCCTGTGTGGAAGATTCCAATTTACAAGCCATGAGTCCCTATGGAAGGACCAAGCTTTTCCTTGAAGAAATAGCACGAGATATTCAGAAAGGTGAGCCAGAATGGAGGATCATTCTGCTGAGATACTTCAACCCAGTTGGAGCCCATGAAAGTGGTAAAATTGGTGAAGATCCCACAGGAATCCCAAATAACCTTATGCCTTATATTCAACAAGTAGCTGTTGGAAGATTGCCTCAACTCAATGTATATGGTCATGATTATCCTACCAAGGATGGCTCTGCGGTCCGGGACTATATCCACGTGATGGACTTGGCAGATGGTCACATTGCTGCCCTGAGAAAACTTTTCACCACCGAGAACATAGGTTGTACTGCTTACAATCTAGGAACCGGTCATGGTACATCTGTGTTTGAAATGGTTACAGCATTTGAAAAAGCTTCTGGCAAGAAAATTCCTGTGAAATTGTGTCCAAGGAGGGCAGGAGATGCAATTGAGGTTTATGCATCTACTGAAAAAGCTGAAAAAGAACTTGGTTGGAAGGCAAAATATGGTGTAGAAGAGATGTGCAGGGATCAATGGAATTGGGCAAAGAATAACCCATGGGGTTACAAAGGAAAAAGAGTTGAATGA 1062 0.3983 MVLSNNETILVTGGAGFIGTHTVVQLLEDGFNVSIIDNLHNSDIEAVNRVREVVGPNLSNNLQFTQGDLRNKDDLDKLFSKTKFDAVIHFAGLKAVGESVTNPRRYFDFNLVGTINLYQVMAKYNCKKMVFSSSATVYGQPERIPCVEDSNLQAMSPYGRTKLFLEEIARDIQKGEPEWRIILLRYFNPVGAHESGKIGEDPTGIPNNLMPYIQQVAVGRLPQLNVYGHDYPTKDGSAVRDYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGHGTSVFEMVTAFEKASGKKIPVKLCPRRAGDAIEVYASTEKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGYKGKRVE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1374 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 348 IPR036291 -
Lal15g1374 353 Pfam GDP-mannose 4,6 dehydratase 10 335 IPR016040 -
Lal15g1374 353 TIGRFAM galE: UDP-glucose 4-epimerase GalE 9 344 IPR005886 GO:0003978|GO:0006012
Lal15g1374 353 CDD UDP_G4E_1_SDR_e 8 341 IPR005886 GO:0003978|GO:0006012
Lal15g1374 353 Gene3D - 198 340 - -
Lal15g1374 353 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 4 350 - -
Lal15g1374 353 Gene3D - 9 280 - -
Lal15g1374 353 PANTHER UDP-GLUCOSE 4-EPIMERASE 4 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1374 Lal-Chr15 15866868 15872117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1374 8 339 Miscellaneous Gene Families AT4G00110 27.089 2.07e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1374 K01784 - gmx:100781806 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1374 15 15866868 15872117 Lal19g1045 19 14248776 14249828 LSH