Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1044 ATGGCGAAAACTTCCAAGTCACAAGAAAAAATAGCGAATGAAGCTATAAAGCATGCTTTGAAGGCTCTGAAGAAACGCCATTTACTCGAAGAAGCTGCTCATGCTCCTGCTTTTCAAGCTCTTTCTAGACCCTTCGCTTCTCAGGGCTCTGAGTGGAAAGAGAAAGCAGAGAATCTTCAAGTGGAACTTCAGCAATTCTACAAAGTTCAATCTCGGCTTTCAGAGCAACTTGTTGTGGAAGTTGCCGAGTCTAGAGTTTCAAAAGCTTTGGTTCAAGAGAAAGAAACTGCAATCGCTGATATGCAAAAGGAGTTGACCGAAGTGAGGGAGGAGAGCTCTCAATTAAATTTGGACCTAGAACAAAAGATTAAAGAGCTAGAAGTGATTGTGAGTGAGAATTCAGAACTTAAAGCACAGCTGGAGAAGATGACTTCTAAAGCTACGAATGCTGAAGCTGAAAATAAGATGTTGATTGATCGCTGGATGTTAGAAAAGATGAAGGATGCTGAACGCCTCAATGAGTATGCATTCTCTCTTAGAATGGTTTTGGGTTTGGCAAATGCACTATATGAAGACATGATTCAGCGGCTAAGGGCCAGTGGTTTAGAACAACTTGCAAAGCAGCAGGTGGATGGCATAGTTCGCCGAAGTGAAGAAGGTGCTGAATTCTTTTTAGAGTCAAACATTCCCTCCATGTGCAAATATAGGCTGAATGCACACGAAGGTGGTTGTGCTGCCATATTTTTTGAGTACAATTCGAGTAAATTGATTACTGGCGGTCAGGATCGGTCAGTTAAAGTATGGGATACAAATACAGGAACCTTAAGTTCTAATCTTCGTGGCTGCCTTGGCTCGGTGTTAGATCTCATAATCACTCATGATAATAGATCTGTCATTGCTGCAAGCAGCTCAAACAACTTGTATGTGTGGGATCTCAGCTCGGGTCGTGTTCGTCATTCCCTTACTGGCCACACAGATAAAGTTTGTGCTGTTGATGCCAGCAAGGTTTCAAGTCGTCATGTTGTGAGTGCATCCTATGATCGCACTATAAAAGTTTGGGACTTAGTGAAAGGATACTGCACTAACACAATCATTTCTCACAGCAACTGCAATGCCCTTTCCTTCAGCACAGATGGACAGACCATATTTTCTGGACATGTTGATGGTAACCTTCGGTTGTGGGACATTCAGACAGGGAAGCTACTGAGCGAGGTTGCTGCACACTCACTTGCCGTCACATCAATATCTCTTTCTCGAAATGGAAATGTTGTATTGACCAGTGGAAGGGACAATTTGCACAATTTGTTTGACGTGCGTTCCTTGGAAGTTTGTGGCACACTAAGAGCTGCCGGAAACAGAGTGGCTTCCAATTGGAGTCGCTCCTGTATTAGTCCAGACGACAATCATGTTGCTGCCGGGTCTGCTGATGGGTCAATTTATATTTGGTCGATATCGACAGGCGATATTGTTAGTACATTTAAGGAGCACACTTCTTCTGTACTAAGTTGTAGGTGGAGTGGGATTGGAAAACCCCTAGCTTCAGCTGACAAGAATGGAATTATTTGCCTTTGGACATAA 1578 0.4322 MAKTSKSQEKIANEAIKHALKALKKRHLLEEAAHAPAFQALSRPFASQGSEWKEKAENLQVELQQFYKVQSRLSEQLVVEVAESRVSKALVQEKETAIADMQKELTEVREESSQLNLDLEQKIKELEVIVSENSELKAQLEKMTSKATNAEAENKMLIDRWMLEKMKDAERLNEYAFSLRMVLGLANALYEDMIQRLRASGLEQLAKQQVDGIVRRSEEGAEFFLESNIPSMCKYRLNAHEGGCAAIFFEYNSSKLITGGQDRSVKVWDTNTGTLSSNLRGCLGSVLDLIITHDNRSVIAASSSNNLYVWDLSSGRVRHSLTGHTDKVCAVDASKVSSRHVVSASYDRTIKVWDLVKGYCTNTIISHSNCNALSFSTDGQTIFSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLRAAGNRVASNWSRSCISPDDNHVAAGSADGSIYIWSISTGDIVSTFKEHTSSVLSCRWSGIGKPLASADKNGIICLWT 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1044 525 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 525 - -
Lal19g1044 525 CDD WD40 233 524 - -
Lal19g1044 525 ProSitePatterns Trp-Asp (WD) repeats signature. 341 355 IPR019775 -
Lal19g1044 525 Coils Coil 91 160 - -
Lal19g1044 525 SMART WD40_4 440 483 IPR001680 GO:0005515
Lal19g1044 525 SMART WD40_4 314 354 IPR001680 GO:0005515
Lal19g1044 525 SMART WD40_4 272 311 IPR001680 GO:0005515
Lal19g1044 525 SMART WD40_4 357 395 IPR001680 GO:0005515
Lal19g1044 525 SMART WD40_4 486 525 IPR001680 GO:0005515
Lal19g1044 525 SMART WD40_4 398 437 IPR001680 GO:0005515
Lal19g1044 525 SMART WD40_4 230 269 IPR001680 GO:0005515
Lal19g1044 525 Gene3D - 64 368 IPR015943 GO:0005515
Lal19g1044 525 Pfam Autophagy protein 16 (ATG16) 45 173 IPR013923 -
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 355 - -
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 273 - -
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 492 IPR001680 GO:0005515
Lal19g1044 525 Pfam WD domain, G-beta repeat 462 483 IPR001680 GO:0005515
Lal19g1044 525 Pfam WD domain, G-beta repeat 235 269 IPR001680 GO:0005515
Lal19g1044 525 Pfam WD domain, G-beta repeat 359 395 IPR001680 GO:0005515
Lal19g1044 525 Pfam WD domain, G-beta repeat 317 354 IPR001680 GO:0005515
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 400 - -
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 525 IPR001680 GO:0005515
Lal19g1044 525 Gene3D - 369 525 IPR015943 GO:0005515
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 440 IPR001680 GO:0005515
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 404 IPR001680 GO:0005515
Lal19g1044 525 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 525 IPR045160 GO:0000045
Lal19g1044 525 SUPERFAMILY WD40 repeat-like 229 524 IPR036322 GO:0005515
Lal19g1044 525 SMART ire1_9 462 494 IPR018391 -
Lal19g1044 525 SMART ire1_9 289 322 IPR018391 -
Lal19g1044 525 SMART ire1_9 375 406 IPR018391 -
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 363 IPR001680 GO:0005515
Lal19g1044 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 320 IPR001680 GO:0005515
Lal19g1044 525 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Lal19g1044 525 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 8 525 - -
Lal19g1044 525 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Lal19g1044 525 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Lal19g1044 525 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1044 Lal-Chr19 14239477 14243232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1044 321 524 Miscellaneous Gene Families AT5G08390 20.000 9.14e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1044 K17890 - gmx:100778336 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1044 19 14239477 14243232 Lal19g1044 19 14239477 14243232 ECH
Lal14g1482 14 15820777 15825780 Lal19g1044 19 14239477 14243232 LSH