Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1482 ATGGCGAAAGTATGCAAGTCGCAAGAAGAAATTGAGAATGAAGCTATAAAGCATGCTTTGAAGGCTTTGAAGAAACGCCATTTGCTCGAAGAAGCTGCTCATGCTCCCGCTTTTCAAGCTCTTTCTAGACCCTTCGCTTTTCAGGGATCTGAGTGGAAAGAGAAAGCGGAGAATCTGCAACTGGAACTTCAGCAATGCTACAAAGCTCAATCTCGCCTGTCTGAGCAACTTGTTATAGAAGTAGCTGAGTCTCGAGTTTCAAAAGCTTTGGTTCAAGAGAAAGAAACAGCAATTGCTGATCTGCAAAAGGAGTTGACCGAAGTGAGGGAGGAGAGCTCTCAATTAAGGTTGGACTTGGAACAAAACATTAAAGAGCTAGAAGTGATTGTGAGTGAGAATTCAGAACTTAAATCACAGCTGGAGCAGATGACTTCTAAAGCTAAGAACGCTGAAGCTGAAAACAAGATGTTGATTGATCGCTGGATGTTAGAAAAGATGAAGGATGCTGAACGCCTCAATGAGTTCAGCTCATTGCCAGCACCTACTACTGATGTTGTGTTGCCAGCTATGGCAAATGCACTATATGAAGACATGATCCAGCGGCTAAGGGCCAGTGGTTTAGAACAACTTGCAAGGCAGCAGGTGGATGGCATAGTTCGTCGAAGTGAAGATGGTGCTCAAGTCTTTTTAGAGTCAAACATCCCCTCCATGTGCAAATATAGGCTCAATGCACATGAAGGTGGTTGTGCTGCCATATTGTTTGAGTACAATTCAAGTAAATTGGTTACTGGGGGACAGGATCGGTCAGTTAAAGTATGGGATACAAATACAGGATCCTTAAGTTCTAATCTTCATGGCTGCCTTGGCTCAGTGTTAGATCTCACAATCACCCATGATAATCGATCTGTCATCGCTGCAAGCAGCTCAAACAACTTGTATGTGTGGGATCTCAACTCAGGCCGTGTTCGTCATACCCTTACTGGCCACACAGATAAAGTCTGTGCTGTTGATGTCAGCAAGGTGTCAAGTCGTCATGTTGTGAGTGCAGCTTATGACCGTACAATAAAAATTTGGGATTTGGTGAAAGGTTACTGCACTAACACAATCATTTTTCACAGCAATTGCAATGCTCTTTCCTTCAGCATGGATGGACTGACCATATTTTCTGGACATGTTGATGGTAATCTTCGGTTATGGGACATTCAGACAGGGAAGCTACTTAGCGAGGTTGCTGGACATTCACTTGCTGTCACATCAATATCCCTTTCTCGAAATGGAAATGTTGTATTGACCAGTGGAAGGGACAATTTGCACAATTTGTTTGACGTGCGATCCCTGGAAGTTTGTGGCACGCTAAGAGCTGCAGGTAACCGAGTGGCTTCAAATTGGAGTCGATCATGTATTAGTCCAGACGACAATCATGTTGCTGCTGGGTCTGCTGATGGATCTGTTTATATTTGGTCGATATCTAAAGGTGATATAGTCAGTACACTGAAGGAACACGCATCTTCTGTACTGAGTTGTAGATGGAGTGGGGTTGGAAAACCCCTAGCATCAGCTGACAAGAATGGGATTGTTTGCCTTTGGACATAG 1593 0.4382 MAKVCKSQEEIENEAIKHALKALKKRHLLEEAAHAPAFQALSRPFAFQGSEWKEKAENLQLELQQCYKAQSRLSEQLVIEVAESRVSKALVQEKETAIADLQKELTEVREESSQLRLDLEQNIKELEVIVSENSELKSQLEQMTSKAKNAEAENKMLIDRWMLEKMKDAERLNEFSSLPAPTTDVVLPAMANALYEDMIQRLRASGLEQLARQQVDGIVRRSEDGAQVFLESNIPSMCKYRLNAHEGGCAAILFEYNSSKLVTGGQDRSVKVWDTNTGSLSSNLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKIWDLVKGYCTNTIIFHSNCNALSFSMDGLTIFSGHVDGNLRLWDIQTGKLLSEVAGHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLRAAGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEHASSVLSCRWSGVGKPLASADKNGIVCLWT 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 360 - -
Lal14g1482 530 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 8 530 - -
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 445 IPR001680 GO:0005515
Lal14g1482 530 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Lal14g1482 530 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Lal14g1482 530 PRINTS G protein beta WD-40 repeat signature 387 401 IPR020472 -
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 409 IPR001680 GO:0005515
Lal14g1482 530 Coils Coil 56 76 - -
Lal14g1482 530 Gene3D - 373 530 IPR015943 GO:0005515
Lal14g1482 530 CDD WD40 238 529 - -
Lal14g1482 530 Pfam WD domain, G-beta repeat 467 488 IPR001680 GO:0005515
Lal14g1482 530 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Lal14g1482 530 Pfam WD domain, G-beta repeat 405 436 IPR001680 GO:0005515
Lal14g1482 530 Pfam WD domain, G-beta repeat 365 400 IPR001680 GO:0005515
Lal14g1482 530 Pfam WD domain, G-beta repeat 322 359 IPR001680 GO:0005515
Lal14g1482 530 Coils Coil 91 160 - -
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 530 IPR001680 GO:0005515
Lal14g1482 530 Coils Coil 6 26 - -
Lal14g1482 530 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 530 IPR045160 GO:0000045
Lal14g1482 530 ProSitePatterns Trp-Asp (WD) repeats signature. 261 275 IPR019775 -
Lal14g1482 530 ProSitePatterns Trp-Asp (WD) repeats signature. 346 360 IPR019775 -
Lal14g1482 530 Pfam Autophagy protein 16 (ATG16) 48 173 IPR013923 -
Lal14g1482 530 SMART WD40_4 277 316 IPR001680 GO:0005515
Lal14g1482 530 SMART WD40_4 319 359 IPR001680 GO:0005515
Lal14g1482 530 SMART WD40_4 362 400 IPR001680 GO:0005515
Lal14g1482 530 SMART WD40_4 403 442 IPR001680 GO:0005515
Lal14g1482 530 SMART WD40_4 235 274 IPR001680 GO:0005515
Lal14g1482 530 SMART WD40_4 491 530 IPR001680 GO:0005515
Lal14g1482 530 SMART WD40_4 445 488 IPR001680 GO:0005515
Lal14g1482 530 ProSitePatterns Trp-Asp (WD) repeats signature. 387 401 IPR019775 -
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 279 - -
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 325 IPR001680 GO:0005515
Lal14g1482 530 Gene3D - 65 372 IPR015943 GO:0005515
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 469 497 IPR001680 GO:0005515
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 368 IPR001680 GO:0005515
Lal14g1482 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 530 - -
Lal14g1482 530 SUPERFAMILY WD40 repeat-like 234 529 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1482 Lal-Chr14 15820777 15825780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1482 326 529 Miscellaneous Gene Families AT5G08390 20.000 3.21e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1482 K17890 - gmx:100778336 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1482 14 15820777 15825780 Lal14g1482 14 15820777 15825780 ECH
Lal14g1482 14 15820777 15825780 Lal19g1044 19 14239477 14243232 LSH