Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1043 ATTCATAGCCTCTCTATTTCTCCACCTTCCTCCATTCAATTGGTATACACTAAGCAAAGCAATATAGAAATGAAGAGGCTATTGTGGGTTGTTCTGTCCCTTTCTATGGTTCTTGCAGTGGCAGAGAGCTTTAACTTCCATGACAAGGATTTAGCTTCTGATAAAGACTTGTGGAACTTGTATGAGAAATGGAGGAGCCACCACACGGTTTCTCGAAGCCTCGACGAGAAGCAAAAGCGCTTCAATGTGTTCAAAGCCAATGTGATGCATGTCCATGATACAAACAAACTAGACAAGCCTTATAAGCTCAAGTTGAACAAGTTTGCTGACTTGACCAACCATGAATTCAGGAGTATCTATGCTAGCTCAAAGGTTCATCATCACAGAATGTTCCACGGCGCGCAACGTGGGAATAGGACATTCATGCATGAGATTGTTGCTAGTGTTCCTCCTTCTATAGATTGGAGGGAAAAAGGTGCTGTCACTGATGTAAAGGATCAAGGCCAATGTGGTAGTTGTTGGGCATTTTCAACTATTGTAGCTGTTGAAGGCATTAACCAAATCAAGACAAATAAGCTAGTGTCCTTGTCTGAGCAAGAGCTTGTAGATTGTGACACTTTAATAAATGAAGGATGCAATGGTGGACTAATGGAATATGCATTTGAGTTCATTAAGCAAAATGGTGGCATAACAACAGAAACTAATTACCCTTATAAAGCTGTAGATGGAATCTGTGATGTATCAAAGGAGAAAGAGCCAGCAGTGTCAATTGATGGGTATGAGAGTGTCCCACAGAACAATGAGGCTGCATTGCTCAAAGCTGCTGCAAACCAACCTATATCTGTAGCCATTGATGCTGGTGGATCTGACTTCCAATTCTACTCAGAGGGAGTATTTACTGGGGAATGTGGCACTTACCTGGATCATGGGGTAGCAATTGTGGGGTATGGAGCAACTCTAGATGGAACAAAATATTGGATAGTGAAGAACTCATGGGGATCAGAATGGGGAGAACATGGTTACATCAGAATGGAGAGAGACATATCTAATAAGTATGGTATATGTGGTATAGCAATGGAAGCTTTCTACCCAATCAAAAATTCCCCCATTAACCCAATAAAACATTCTTCATCTCTTAAAGATGAACTTTAA 1152 0.4106 IHSLSISPPSSIQLVYTKQSNIEMKRLLWVVLSLSMVLAVAESFNFHDKDLASDKDLWNLYEKWRSHHTVSRSLDEKQKRFNVFKANVMHVHDTNKLDKPYKLKLNKFADLTNHEFRSIYASSKVHHHRMFHGAQRGNRTFMHEIVASVPPSIDWREKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTLINEGCNGGLMEYAFEFIKQNGGITTETNYPYKAVDGICDVSKEKEPAVSIDGYESVPQNNEAALLKAAANQPISVAIDAGGSDFQFYSEGVFTGECGTYLDHGVAIVGYGATLDGTKYWIVKNSWGSEWGEHGYIRMERDISNKYGICGIAMEAFYPIKNSPINPIKHSSSLKDEL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1043 383 SUPERFAMILY Cysteine proteinases 56 366 IPR038765 -
Lal19g1043 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 167 178 IPR000169 -
Lal19g1043 383 CDD Peptidase_C1A 150 364 IPR039417 -
Lal19g1043 383 Pfam Papain family cysteine protease 149 365 IPR000668 GO:0006508|GO:0008234
Lal19g1043 383 SMART Inhibitor_I29_2 61 116 IPR013201 -
Lal19g1043 383 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 40 372 - -
Lal19g1043 383 Gene3D Cysteine proteinases 33 367 - -
Lal19g1043 383 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 372 - -
Lal19g1043 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
Lal19g1043 383 Pfam Cathepsin propeptide inhibitor domain (I29) 61 116 IPR013201 -
Lal19g1043 383 PRINTS Papain cysteine protease (C1) family signature 167 182 IPR000668 GO:0006508|GO:0008234
Lal19g1043 383 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Lal19g1043 383 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Lal19g1043 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Lal19g1043 383 SMART pept_c1 149 365 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1043 Lal-Chr19 14236402 14238244 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1043 K16292 - zju:107418255 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1043 19 14236402 14238244 Lal19g1043 19 14236402 14238244 ECH
Lal19g1043 19 14236402 14238244 Lal17g0874 17 6711928 6714034 PCT
Lal17g0874 17 6711928 6714034 Lal19g1043 19 14236402 14238244 PCT