Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0874 ATGGAAATGAAGAAGCTCTTATGGGTAGCTCTATCACTCGCTTTCGTTTTCGCAATCGCCGAGAGCTTCGATTTGCATGAGAATGATTTAGCATCAGATGAGAGTTTGTGGGACTTATACGAGAGATGGAGGAGTCACCACACAGTTTCTCAGAGCCTAGATGAGAAGCACAAGCGCTTCAATGTGTTCAAAACAAATGTGATGCATGTTCACAACACTAACAAAATGGACAAGCCTTACAAGTTGAAACTGAACAAGTTTGCTGACATGACCAACCATGAATTTAGAAGTAGCTATGCTGGTTCAAAGATTAACCACCACTTAATGTTCAAAGACATGCCAAGTGGTAATGGGTCCTTCATGTATGAGAAGTTTGACCTAGTTCCTACTTCTATAGATTGGAGGAAGAAAGGTGCTGTCTCCCTTGTAAAGGATCAAGGTCAATGTGGTAGTTGTTGGGCGTTTTCTACTGTTGTAGCAGTTGAAGGTATTAACCAAATCAAGACAAATAAGTTAGTCTCATTGTCTGAACAAGAGCTTATTGATTGTGACAATAAAGAAAATCGTGGATGCCAAGGTGGGCTAATGGAAAATGCTTTTGAGTTCATCAAGAAAAAGGGTGGCATAACAACAGAAAGAAATTACCCTTATGCAGCAGAAGATGGAACCTGTAATAAATCAAAGATGAATAATGTGGTTGTGTCAATTGATGGTCATGAGAAAGTACCTGCAAACAATGAAGATGCACTGCTCAAAGCAGTTGCTAATCAACCTATATCTGTAGCCATAGATGCTGGAGGAACTGATTTCCAGTTTTACTCAGAGGGAGTATTTAGTGGTGAATGTGGCACAGAGCTAAATCATGGTGTAGCAATTGTGGGGTATGGAAAAACTGTTGATGGAACCAAATATTGGATAGTAAGAAACTCTTGGGGATCAGAATGGGGAGAACAAGGTTACATAAGAATGCATAGGGGCATATCTGACAAGAAGGGACTATGTGGCATAGCTATGTTACCTTCTTACCCAATCAAAACCTCACCCACAAACCCAACAACAGGAAATTCATCATCTCCTAAAGATGAACTTTAA 1092 0.4002 MEMKKLLWVALSLAFVFAIAESFDLHENDLASDESLWDLYERWRSHHTVSQSLDEKHKRFNVFKTNVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSSYAGSKINHHLMFKDMPSGNGSFMYEKFDLVPTSIDWRKKGAVSLVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVSLSEQELIDCDNKENRGCQGGLMENAFEFIKKKGGITTERNYPYAAEDGTCNKSKMNNVVVSIDGHEKVPANNEDALLKAVANQPISVAIDAGGTDFQFYSEGVFSGECGTELNHGVAIVGYGKTVDGTKYWIVRNSWGSEWGEQGYIRMHRGISDKKGLCGIAMLPSYPIKTSPTNPTTGNSSSPKDEL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0874 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Lal17g0874 363 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Lal17g0874 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Lal17g0874 363 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Lal17g0874 363 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 351 - -
Lal17g0874 363 Gene3D Cysteine proteinases 14 346 - -
Lal17g0874 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Lal17g0874 363 SMART Inhibitor_I29_2 40 95 IPR013201 -
Lal17g0874 363 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Lal17g0874 363 MobiDBLite consensus disorder prediction 344 363 - -
Lal17g0874 363 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Lal17g0874 363 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Lal17g0874 363 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Lal17g0874 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 351 - -
Lal17g0874 363 CDD Peptidase_C1A 129 343 IPR039417 -
Lal17g0874 363 SUPERFAMILY Cysteine proteinases 32 344 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0874 Lal-Chr17 6711928 6714034 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0874 K16292 - gmx:547487 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0874 17 6711928 6714034 Lal17g0874 17 6711928 6714034 ECH
Lal19g1043 19 14236402 14238244 Lal17g0874 17 6711928 6714034 PCT
Lal17g0874 17 6711928 6714034 Lal19g1043 19 14236402 14238244 PCT