Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1592 ATGTTGACTTATAATTCCACACCTGAAAAATCAATGGCACCAGCAATTTTTCTGCTTCTTTTATCTCTTGTGTTAATTCCAACAAGTGTGGTTGTTGGTGATGAAGAAGATGGTTTCATCTCTGTGGTGATATCTGATAAGGGTCTTGATTTTGCAAAGCAGTTTCTGATAGAACAAGCTATAGCCTCTATTGTTCCATCTCAACTTCCTGATATTGAGAAGAAAGTCAACGTGCCACTTGTTGGAAAAGCTCAAGTCATTCTATCTGAGATCATAATCAAAGATATCAAAATAAATACTTCATCTGTTAAGACAGGTGAGTCAGGCATTGTTCTAATTGTTTCAGGTGCCACTGCAGATTTGACTATGAATTGGAGGTATACTGCAAGAACTTCTTTTGTTCCAATTGGAATTTCAGATACTGGTACTGCCACTGTGAAGGTTGAAGATCTGCAAGTGGGGCTTACCATAAATCTCAGTAATCAAGAAGGAACTCTTAAGTTGATTCTCTTAGATTATGGATGTAAAGTTGGAGATTTATCTATAAAGTTGAGTGGTGGAGCAGCCTGGCTTTACCAAGTACTAGTAGATGTTTTTGAAGGGAATATAGCATCTGCAGTTGAAGAGGCCATTTCTAAGAAAATAAGAGATGGGATAACCCAACTTGATACTCTACTTCAATCTCTTCCAAAGACAGTCTCATTAGACAAAACTGCAGTCCTGAATGTTTCATTTGTGGGCAATCCTGTGCTGACTAATTCTTCTATTGAACTTGAAATCAATGGTTTATTCACAGGGACAAGTAAAGTTCTAGTACCTCAAACATACCACAGAGGACCCGGGATTTCTGTTCTACGTCCTGGCTCACCAAGGATGATAGAGATTTCATTACATGAGAATGTTTTGAAATCCGCTTCCTCGGTTTATTTTACTGCAGATAGTATGCAATGGATTGTTGATGAGCTACCTGATCGGGCCCTTTTGAACACTGCTGAGTGGAGATTCATTGTTCCTCAATTATACAAGCAATATCCAAATGCTGACATGAATATTAATATCTCTGTATCGTCTGCACCGGTTATACAAGTCACAAACCAAGATATTGAAGCTGCTATTATTGTAGATGTAATAATTAATGTTCTTGAAGCTGGTGAAGTCATTCCTGTTGTCTGCATCTCATTGGACATTAGTGCTTCAGTTGATGTGGAAATAGCAAAAAGCAATATTGCTGGTAGGCTTGCATTGGATAAGTTTTCTATATACTTAAAATGGAGCAAAATAGGAAAGTTGCACATTCAAGTGATTCAGTCAGTGGTGTCAAGTGTACTAAAAACTGTGCTCATACCATTCCTGAACTCACAATTAAAGAGGGGAATACCATTGCCAATGCTGAATGGTTTTGCCCTTGAGAATGCTGGTATCTTGTATGCTCACCCATGGGTTACAGTGTCAACTGATGTTGCCTTCTTGGGACACTCCTATCTCAAACAGAAGACAGCTTATGATGTTATATAA 1515 0.3822 MLTYNSTPEKSMAPAIFLLLLSLVLIPTSVVVGDEEDGFISVVISDKGLDFAKQFLIEQAIASIVPSQLPDIEKKVNVPLVGKAQVILSEIIIKDIKINTSSVKTGESGIVLIVSGATADLTMNWRYTARTSFVPIGISDTGTATVKVEDLQVGLTINLSNQEGTLKLILLDYGCKVGDLSIKLSGGAAWLYQVLVDVFEGNIASAVEEAISKKIRDGITQLDTLLQSLPKTVSLDKTAVLNVSFVGNPVLTNSSIELEINGLFTGTSKVLVPQTYHRGPGISVLRPGSPRMIEISLHENVLKSASSVYFTADSMQWIVDELPDRALLNTAEWRFIVPQLYKQYPNADMNINISVSSAPVIQVTNQDIEAAIIVDVIINVLEAGEVIPVVCISLDISASVDVEIAKSNIAGRLALDKFSIYLKWSKIGKLHIQVIQSVVSSVLKTVLIPFLNSQLKRGIPLPMLNGFALENAGILYAHPWVTVSTDVAFLGHSYLKQKTAYDVI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1592 504 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 41 253 IPR017943 GO:0008289
Lal18g1592 504 Pfam LBP / BPI / CETP family, C-terminal domain 289 488 IPR001124 GO:0008289
Lal18g1592 504 PANTHER OS06G0309200 PROTEIN 12 501 IPR045897 -
Lal18g1592 504 PIRSF Lipid_binding_protein 15 494 IPR030675 GO:0005615|GO:0008289
Lal18g1592 504 SMART bpi1_3 44 269 IPR017942 GO:0008289
Lal18g1592 504 Gene3D - 41 474 - -
Lal18g1592 504 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 12 501 - -
Lal18g1592 504 Gene3D - 47 227 - -
Lal18g1592 504 SMART bpi2_2 287 485 IPR001124 GO:0008289
Lal18g1592 504 Pfam LBP / BPI / CETP family, N-terminal domain 48 221 IPR017942 GO:0008289
Lal18g1592 504 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 254 488 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1592 Lal-Chr18 17444922 17451890 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1592 K05399 - gmx:100804747 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1592 18 17444922 17451890 Lal18g1592 18 17444922 17451890 ECH
Lal11g0715 11 7013050 7019968 Lal18g1592 18 17444922 17451890 PCT
Lal18g1592 18 17444922 17451890 Lal11g0715 11 7013050 7019968 PCT