Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1390 ATGTCAACCAAAGTTCATGACTTTTTCAATCATACAAAATACCCATTCATTCTCACTCTCTTGCTTTTCCTTATTTGCTTCACGCTCCTCCTTTTCACTAACATCACCACCTTCAACTTCAACCCATTTCATTTCTATTCTGATTCTAATGCCATAAACAAAGACCAACCACCCCTTAACCAATACATCACTGTCCCAAAGGATAGTAATGTTAATATAGAGTGGAAGCTTTGTAAGGGTGGTTCTTTGGTGGTTGATTATATACCTTGTTTGGATAATTTAGTGGCCATTAAGGCTCTCAAGTCAAGGAAGCACATGGAACACAGAGAAAGGCATTGTCCTAATGTTAGTCTTCATTGTTTGTTGCCCCTTCCCAAAGGGTATAAAGGCTCAGTTCTGTGGCCTAAGAGCAGAGACATGATTTGGTATGATAATGTCCCTCATCCAAAACTAGTTGAGTACAAGAAGGATCAACGCTGGGTGGAGAAGTATGGCGAGTATCTTGTCTTTCCAGGAGGTGGTACTCAATTCAAGGGTGGAGCTGATCATTACATTGAGTTCATAGAGAAGACATTACCAGCAATTCAGTGGGGAAAACATGTCAGAGTTGTTCTAGATGTTGGCTGCGGTGTTGCTAGCTTCGGTGGCTATCTGCTGGACAAAAATGTTATTACTATGTCGTTTGCTCCAAAGGATGAACATGAAGCTCAGATACAATTTGCTTTGGAGCGAGGAATTCCTGCAACTCTTTCCGTTATTGGAACACAAAGGTTGAGTTTTCCTGACAATGGGTTTGATTTGATCCACTGCGCACGATGCAGGGTTCATTGGGATGCAGATGGTGGGAAACCATTATATGAGCTCAATAGAATTCTTAGACCCGGCGGTTTCTTTGTATGGTCTGCAACACCAGTTTATCTTAACGATGAAAGGGATCAGCAAGCATGGAAAGCCACCACAGCCATAACAAAAGCTATGTGCTGGACGGTTGTCGCCAAGGCACGTGATCCATCTGGACATGGGCTGGTTATATACCAGAAGCCTACGTCGTCTTCCTGCTACGAGAAGCGTGAAGTGAAAACCCCACCTATATGCATAAATGAGGATGGGAAAAATAGTTCATGGTATGCCATACTCAATAGTTGCCTTACTCCTCTTCCAGTTGATGGTGCGGGTAACGTGCAGAACTGGCCGGTGCCTTGGCCCCAAAGGCTTACCAGTAAGCCTCCTGGTTTATCTACTGATTCAGACGCAAATGATAAGTTCCACAAGGACAGCAAACACTGGTCTAAATTAATTTCCGATGTTTATGCGGATGGTCTTTCCATAAACTGGTCAGGTGTTCGAAATATAATGGACATGAATGCCGGTTATGCAGGATTTGCCACAGCGATCACTGATCGACCAGTCTGGGTGATGAATGTAGTACCGATAGATGCGCCAGATACTCTTTCTATTATATATGACAGAGGGTTGATAGGAATGTATCATGATTGGTGTGAGTCTTTTAATACGTATCCGCGCACATATGATCTCCTGCATTCGAGTTTTCTCTTCAAATATCTTGAGCAAAGATGTGACATTGTAGACGTGGTTGCGGAGATGGATCGTATACTGAGACCAGATGGATATCTCGTGGTTCAAGACTCTATGGACATACTTAACAAGCTCAGTCCAATCTTGCGTTCACTTAATTGGTCTGTAACATTGCATCGAAATCAGTTTATTGTTGGTCGGAAGAGTTTCTGGCGTCCCACGGTTGTTGAAACTGAATGA 1776 0.4302 MSTKVHDFFNHTKYPFILTLLLFLICFTLLLFTNITTFNFNPFHFYSDSNAINKDQPPLNQYITVPKDSNVNIEWKLCKGGSLVVDYIPCLDNLVAIKALKSRKHMEHRERHCPNVSLHCLLPLPKGYKGSVLWPKSRDMIWYDNVPHPKLVEYKKDQRWVEKYGEYLVFPGGGTQFKGGADHYIEFIEKTLPAIQWGKHVRVVLDVGCGVASFGGYLLDKNVITMSFAPKDEHEAQIQFALERGIPATLSVIGTQRLSFPDNGFDLIHCARCRVHWDADGGKPLYELNRILRPGGFFVWSATPVYLNDERDQQAWKATTAITKAMCWTVVAKARDPSGHGLVIYQKPTSSSCYEKREVKTPPICINEDGKNSSWYAILNSCLTPLPVDGAGNVQNWPVPWPQRLTSKPPGLSTDSDANDKFHKDSKHWSKLISDVYADGLSINWSGVRNIMDMNAGYAGFATAITDRPVWVMNVVPIDAPDTLSIIYDRGLIGMYHDWCESFNTYPRTYDLLHSSFLFKYLEQRCDIVDVVAEMDRILRPDGYLVVQDSMDILNKLSPILRSLNWSVTLHRNQFIVGRKSFWRPTVVETE 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1390 591 Gene3D Vaccinia Virus protein VP39 159 348 IPR029063 -
Lal18g1390 591 CDD AdoMet_MTases 204 299 - -
Lal18g1390 591 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 86 574 IPR004159 GO:0008168
Lal18g1390 591 Gene3D Vaccinia Virus protein VP39 394 580 IPR029063 -
Lal18g1390 591 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 5 586 IPR004159 GO:0008168
Lal18g1390 591 PANTHER PMT16, PUTATIVE-RELATED 5 586 - -
Lal18g1390 591 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 309 IPR029063 -
Lal18g1390 591 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 422 560 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1390 Lal-Chr18 16180543 16184684 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1390 - - gmx:100800390 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1390 18 16180543 16184684 Lal18g1390 18 16180543 16184684 ECH
Lal21g1262 21 15853506 15858166 Lal18g1390 18 16180543 16184684 LSH
Lal21g1262 21 15853506 15858166 Lal18g1390 18 16180543 16184684 PCT
Lal18g1390 18 16180543 16184684 Lal18g1390 18 16180543 16184684 PCT
Lal18g1390 18 16180543 16184684 Lal21g1262 21 15853506 15858166 PCT