Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0405 ATGAAGCATTCTCATATTTTACCACTATTGTTCTGCATATTTTTCTCTACTTTCTTTCTTTCCATTCAAGCTAGGCATCATTCTCATACAAAACAAAAACACTCACATTCTCATAAATCATATGAAACTTCACAACCTCCTAGCCAGAACTATAGTAACCCATCAAACATTTTAGATGTAAGAACATTTGGAGCCATAGGAGATGGAATAACAGATGATACAGAATCATTCAAGATTGCATGGGACACTGCATGTCAAAGTGAATTAGCACAAAATATTATCCTTGTTCCACAAGGTTTCTCTTTTATCATTCAGTCTACAATCTTCACAGGTCCATGTCAAGGTGGCTTAGTATTGAAGGTGGATGGCACTGTTATGCCACCAGATGGACCAGATTCTTGGCCTAAGAATAATAGTAGGCATCAATGGCTGGTTTTTTACAGAATCAATGGAATGTCATTAGAAGGTAGTGGTCTAATAAATGGTAGAGGAGAAAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGACCTAATGGAACAACACTCTCAGGACCTTGTGATAGCCCTATTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTATGCATGGACTTAGAATAGAGAACAGCCCTCAGTTCAATGTCAGATTTGATGGCTGTGAAAATGTTCATATAGAATCAATCTTCATAAAAGCTCCAAAAGATAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGATGTGAAAATATACAATTCTTTAATCTCTAATGGGGATGATTGCGTGTCGATTGGATCTGGCTGCTATGATGTGGATATAAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGCTTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATATACAGATAATGGTGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCTGTATCAGGAGTAACATTCAACAATATTCATATGGAGAGTGTAAGAAATCCAATCATAATTGACCAGTTTTATTGCCTCACTAAGGATTGTACTAATAAAACTTCTGCAGTCACTGTATCAAATATACTTTACACTAACATCAAGGGAACATATGATATAAGGAGCCCCCCTATGCAATTTGCATGCAGTGATTCTGTTCCATGCACCAACTTAACACTCTCAGATATTGAACTTCTTCCTAATCAAGGAGATATAGTGCATGATCCTTTTTGTTGGAATGCTTATGGAGATTTACAGACACTAACCATTCCACCAGTCTATTGCTTGCTCGAGGGAACGCCTCGGTTCGTGTTAGAAAATGACATTAGTCATTGCTGA 1365 0.381 MKHSHILPLLFCIFFSTFFLSIQARHHSHTKQKHSHSHKSYETSQPPSQNYSNPSNILDVRTFGAIGDGITDDTESFKIAWDTACQSELAQNIILVPQGFSFIIQSTIFTGPCQGGLVLKVDGTVMPPDGPDSWPKNNSRHQWLVFYRINGMSLEGSGLINGRGEKWWDLPCKPHKGPNGTTLSGPCDSPIAIRFFMSSNLTMHGLRIENSPQFNVRFDGCENVHIESIFIKAPKDSPNTDGIHIENTNDVKIYNSLISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKYTDNGVRIKTWQGGSGSVSGVTFNNIHMESVRNPIIIDQFYCLTKDCTNKTSAVTVSNILYTNIKGTYDIRSPPMQFACSDSVPCTNLTLSDIELLPNQGDIVHDPFCWNAYGDLQTLTIPPVYCLLEGTPRFVLENDISHC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0405 454 Pfam Glycosyl hydrolases family 28 85 407 IPR000743 GO:0004650|GO:0005975
Lal18g0405 454 PANTHER - 8 444 - -
Lal18g0405 454 Gene3D - 42 437 IPR012334 -
Lal18g0405 454 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 8 444 - -
Lal18g0405 454 MobiDBLite consensus disorder prediction 30 53 - -
Lal18g0405 454 ProSitePatterns Polygalacturonase active site. 278 291 IPR000743 GO:0004650|GO:0005975
Lal18g0405 454 SMART pbh1 198 220 IPR006626 -
Lal18g0405 454 SMART pbh1 271 291 IPR006626 -
Lal18g0405 454 SMART pbh1 330 351 IPR006626 -
Lal18g0405 454 SMART pbh1 301 322 IPR006626 -
Lal18g0405 454 SMART pbh1 221 247 IPR006626 -
Lal18g0405 454 SMART pbh1 248 269 IPR006626 -
Lal18g0405 454 SUPERFAMILY Pectin lyase-like 55 443 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0405 Lal-Chr18 3434436 3437380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0405 57 454 Glycoside Hydrolase AT1G02460 71.072 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0405 - - lang:109331836 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0405 18 3434436 3437380 Lal18g0405 18 3434436 3437380 ECH
Lal18g0405 18 3434436 3437380 Lal13g0546 13 3552979 3555465 PCT
Lal13g0546 13 3552979 3555465 Lal18g0405 18 3434436 3437380 PCT