Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0546 ATGGGGCATTCTAGTATTTTACCAATAGGAATATTCTCCATGTATTTTCTTACTTTATTCTTATGCACCCAAGGTAGACACCATTTCCATAAACACAAGAACTCACATTCTCATTATACACATGCACCTTCTATAGCTACCCCTCCTGCTGAAGCACCTGGCCCTGCTAGTAATGATAACTACACCAATGAATCTGGCTTTTATGATGTAAGAGCATTTGGTGGCATTGGTGATGGAATAAGTGATGACACTGAGTCTTTGAAAATGGCTTGGGATGCTGCTTGCCAAAGTGAATTACAAGTTAATGTTATTCTTCTTCCACGTGGTCTCTCCTTTGTTATTCACCCAACTATCTTCACAGGCCCTTGTAAAGGTAGCTTAATATTAAGGGTTGATGGCACTCTTATGCCACCTGATGGACCCGAATCTTGGCCTAACAATACTAGTAAGCGTCAATGGCTGATTTTTTACAGAATCAATGGAATGTCACTTGAAGGAACTGGTTTAATAGATGGTAGAGGACAAAAATGGTGGGACCTTCCTTGCAAGCCTCATAAGGGACCTAATGGGACAACAGCTCCAGGACCTTGTGATAGCCCAATTGCCTTAAGGTTTTTCATGAGTTCCAACTTAACTGTGAAAGGACTTAGGATCAAGAACAGCCCTCAGTTCCATTTCAGATTTGATGGCTGTGAAAGTGTCCATATAGAATCAATTTACATCACAGCTCCAGCACTAAGCCCCAATACTGATGGATTACACATAGAAAATACCAATGATGTGAGAATATACAATTCTGTCGTTTCTAATGGTGATGATTGTGTGTCCATTGGATCTGGTTGCTATGATGTTGATATAAAGAATATCACATGTGGACCTGGTCATGGTATTAGCATTGGTAGTCTTGGAAATCACGACTCTAGAGCCTGTGTTTCAAACATTACAGTGAGAGACTCAGTTATAAAAGTGTCAGATAATGGAGTTAGAATCAAGACATGGCAAGGAGGGTCAGGATCAGTATCAGGAGTAACATTCAGTAACATTGAAATGGATAGTGTAAAAAACCCAATTATAATTGACCAATTCTACTGTCTCTCTAAGGAATGTAACAACAAGACCTCTGCAGTATTTGTATCAGATATACATTACAATAACATAAAGGGAACTTATGATATAAGGCATCCACCTATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACTAACTTGACTCTCTCAGATATTGAGCTTCTTCCAGCTCAAGGAGATATTGTTCTTGATCCCTTCTGTTGGAATGCTTATGGAAATTTGGATACACTAACCATTCCTCCAATCTCTTGCTTAATGGAGGGTATTCCTCCTCAGTCCATTGTAGGCAATGAAATATATCATTGCTGA 1398 0.3956 MGHSSILPIGIFSMYFLTLFLCTQGRHHFHKHKNSHSHYTHAPSIATPPAEAPGPASNDNYTNESGFYDVRAFGGIGDGISDDTESLKMAWDAACQSELQVNVILLPRGLSFVIHPTIFTGPCKGSLILRVDGTLMPPDGPESWPNNTSKRQWLIFYRINGMSLEGTGLIDGRGQKWWDLPCKPHKGPNGTTAPGPCDSPIALRFFMSSNLTVKGLRIKNSPQFHFRFDGCESVHIESIYITAPALSPNTDGLHIENTNDVRIYNSVVSNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHDSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIEMDSVKNPIIIDQFYCLSKECNNKTSAVFVSDIHYNNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAQGDIVLDPFCWNAYGNLDTLTIPPISCLMEGIPPQSIVGNEIYHC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0546 465 SMART pbh1 258 279 IPR006626 -
Lal13g0546 465 SMART pbh1 231 257 IPR006626 -
Lal13g0546 465 SMART pbh1 311 332 IPR006626 -
Lal13g0546 465 SMART pbh1 281 301 IPR006626 -
Lal13g0546 465 SMART pbh1 340 361 IPR006626 -
Lal13g0546 465 Pfam Glycosyl hydrolases family 28 101 417 IPR000743 GO:0004650|GO:0005975
Lal13g0546 465 Gene3D - 51 449 IPR012334 -
Lal13g0546 465 PANTHER - 9 454 - -
Lal13g0546 465 SUPERFAMILY Pectin lyase-like 67 453 IPR011050 -
Lal13g0546 465 ProSitePatterns Polygalacturonase active site. 288 301 IPR000743 GO:0004650|GO:0005975
Lal13g0546 465 MobiDBLite consensus disorder prediction 33 59 - -
Lal13g0546 465 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0546 Lal-Chr13 3552979 3555465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0546 63 465 Glycoside Hydrolase AT1G02460 71.675 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0546 - - gmx:100792285 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0405 18 3434436 3437380 Lal13g0546 13 3552979 3555465 PCT
Lal13g0546 13 3552979 3555465 Lal18g0405 18 3434436 3437380 PCT