Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0042 ATGTCTTCTTCCAATGATGACACTGAGAGGGAGATAGTAAAGAGTCTTAGTGATTTGGGAAGGAACCTTCTCAATTCCATTTCTCTTCAAGTTGAAGATATGAACCTTCTTCAACTTCTCAATGAATTGGCGCTAGTGTTATCAACCATGGATCAAGCACCAACTGAGCCAATTCAGAAATCACTTTTACCTTCAATGAGGGCATTGATTTCTGATGAGCTTTTGAGGCACACAAACGGTGATGTTAAAATTTCAGTTACATGTTGCATCACTGAGATTGCAAGAATTACAGCACCCGAAGTCCCTTTTAATGATGAACTGATGAAGGAAATTTTCAAGCTTATAGTGTCAGCTTTCGAGAAACTATCTCATGTATCTGGCCACTGTTATGAAAAAGTACTTTCGATAATTGATAATTTTGCAAACCTCAGATTATGCTTGGTCATGCTGGATCTTGGGTGTGATGACCTGGTTATTGAGATGTTTCAGCATTTCTTGATAAATATAAGGTCAAACCATCTGCGCCATGTAATTGATTGCATGGAAACCATAATGACCATGGTCTTGAGTGAATCTGAAGAAATTTCCTCAGATCTTCTAAGACCTCTATTAAACAGTGTAAGAAATGAAAATAAGACTATTTCACCCATTTCTTGGACATTGGGGGAGAAAGTAATTACCAATTGTGCCGTTAAGCTTAAGCCCTATCTAATGAAAGCAGTGGAGACTTCAGGTCGAACTCTTGATGAGTATGCACAAATAGTTTCTACTATTTTCCAGAGTGAATTTGAATCCCCCCAACATGATCATTCAAACGGTTCTAAGGAGAAAGAGATTCTACTTAGGATTGGTTGTGTTGCAATGCTTCAGGTTCAGGCAGTGGAGAACAATCTTGAAGTACCTAAAGATGAAGATAAACAGCCCCATGATGTGACCAAGGTTCATGAACTAGATATTACTTGTGTGATAGATGCCCAAACTATGGATGATACTAAATCAAATATGAGAAGTGCCAGTGCTTCTACTAAGGATTCTGAAGTTATCAAAAAGTGTAGGTCAAAAAGGAAAAAGCATTCGGATCCTACCAAGCACTTGAAAAGCAGCAACACAAAAATCAAATCAGAAAATGGCAATTTAGTTTCTGAGCTGGAGCCAAAATCAGAAACTCGGCTGAATACTGTACCAAGGAAGAGAGGCCGTAAGGAAGGCTATGATGGCTCTTGCATTTCTGAGGGAACAAAAACTGGAAAATCAGCTCTATCCAGAAAGGCTCGTGATAGCAGTTCTTCTTTTTCACCTTCGGAAAACCCTGCTTCTAGAAAGGACAAGTTGCGGTCAAAGCGTAAAACTGCAAGTGAAGCTGTAGTTTCTGAGCTACTAAATAAGAACATAATAAAACCTGCTCAGTCCAGAAAGACACACAACATTGGCAGCATTGTTCCATCCGTTGAAAGTCCTGCTTCCAACAAGGTTAATGCACAGTCACAGCCTGAAGATATTAGGAAAGGTCACGGAGTGTCAAATTCTAAACCGAAGGCTGATAAGAATACATATGTTGCTTCTCATTTGACAAATAATAACATATCTCATGGGAGCCGCTCCAAAGGGGGACGGCGAAGGAAAATAAACAGGACAGACAATCAAGATGGTGATTCTAAATCTGTGTCAAAATTAAAGGAAGGAAAGTTGAATCCTCTGCTCGAAGAGACTGCTTCGGAATCTCCTGCTTCAAAACCTAAGACATCCATTGGAATCAAATTTTCTGCTAAAAAACATGTTGAGAAAACTGCTGTGGCTCCTGAATTGGCAGTTGCTAAGATGGAAACTAAGGATTATTGTGAGAGTAAAGAAGATGCCAGGTCCTCAGTAAGGCGGAAGAGAAATCAAACCACAGCATCTGAAACTCGTGACCTTGGTGAGTCATTGGTTGGTAGTAAGATCAAGGTTTGGTGGCCAATGGACAAAATGTTTTATGAAGGCATTGTGGATTCGTATGATCCTGTCAAAGGAAAGCACAAGATTCTGTATGCTGACGGTGAGGTGGAAATATTAAACATGAAAAGGCAGCGCTGGGAGGTAATTGCTGCCGATGTTCCAGCAGATGAGGAACAAGGACATGCTCTTCACAAGCTTGCAGAGGCATCATATATAGTGCAAAAAATCAAAGAAGAACCTGACTTGGAATCAGACAAGAGTAAAAACATCAATTTCCGGTCCAGGGGTAGAAGTTCTTCAAGCATCTCCAAATGTTAA 2253 0.3999 MSSSNDDTEREIVKSLSDLGRNLLNSISLQVEDMNLLQLLNELALVLSTMDQAPTEPIQKSLLPSMRALISDELLRHTNGDVKISVTCCITEIARITAPEVPFNDELMKEIFKLIVSAFEKLSHVSGHCYEKVLSIIDNFANLRLCLVMLDLGCDDLVIEMFQHFLINIRSNHLRHVIDCMETIMTMVLSESEEISSDLLRPLLNSVRNENKTISPISWTLGEKVITNCAVKLKPYLMKAVETSGRTLDEYAQIVSTIFQSEFESPQHDHSNGSKEKEILLRIGCVAMLQVQAVENNLEVPKDEDKQPHDVTKVHELDITCVIDAQTMDDTKSNMRSASASTKDSEVIKKCRSKRKKHSDPTKHLKSSNTKIKSENGNLVSELEPKSETRLNTVPRKRGRKEGYDGSCISEGTKTGKSALSRKARDSSSSFSPSENPASRKDKLRSKRKTASEAVVSELLNKNIIKPAQSRKTHNIGSIVPSVESPASNKVNAQSQPEDIRKGHGVSNSKPKADKNTYVASHLTNNNISHGSRSKGGRRRKINRTDNQDGDSKSVSKLKEGKLNPLLEETASESPASKPKTSIGIKFSAKKHVEKTAVAPELAVAKMETKDYCESKEDARSSVRRKRNQTTASETRDLGESLVGSKIKVWWPMDKMFYEGIVDSYDPVKGKHKILYADGEVEILNMKRQRWEVIAADVPADEEQGHALHKLAEASYIVQKIKEEPDLESDKSKNINFRSRGRSSSSISKC 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0042 750 MobiDBLite consensus disorder prediction 389 407 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 541 566 - -
Lal18g0042 750 SUPERFAMILY Tudor/PWWP/MBT 641 681 - -
Lal18g0042 750 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 11 735 IPR039776 GO:0007064
Lal18g0042 750 MobiDBLite consensus disorder prediction 330 450 - -
Lal18g0042 750 SUPERFAMILY ARM repeat 11 250 IPR016024 -
Lal18g0042 750 MobiDBLite consensus disorder prediction 479 496 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 371 388 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 614 636 - -
Lal18g0042 750 PANTHER SISTER CHROMATID COHESION PDS5-LIKE PROTEIN 11 735 - -
Lal18g0042 750 Pfam Sister chromatid cohesion protein PDS5 protein 36 238 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 510 532 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 614 633 - -
Lal18g0042 750 Gene3D - 635 688 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 479 581 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 725 750 - -
Lal18g0042 750 MobiDBLite consensus disorder prediction 411 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0042 Lal-Chr18 301388 308507 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0042 - - lang:109340431 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1250 20 17024974 17032785 Lal18g0042 18 301388 308507 LSH